Hb_001971_050

Information

Type -
Description -
Location Contig1971: 74574-77555
Sequence    

Annotation

kegg
ID rcu:RCOM_1072140
description WD-repeat protein, putative
nr
ID XP_002533127.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q6C553
description Protein HIR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=HIR1 PE=3 SV=2
trembl
ID B9T4F8
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1072140 PE=4 SV=1
Gene Ontology
ID GO:0005622
description 66 kda stress protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_050 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_001737_040 0.1325971158 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
3 Hb_029510_090 0.1353991611 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
4 Hb_001778_040 0.140931734 - - hypothetical protein VITISV_021035 [Vitis vinifera]
5 Hb_013848_030 0.1448970617 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
6 Hb_000254_060 0.1524519727 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004785_090 0.1534700936 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
8 Hb_168319_060 0.1547752548 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
9 Hb_065521_010 0.1556604473 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
10 Hb_001963_110 0.1571481514 - - -
11 Hb_000258_210 0.15778309 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
12 Hb_003092_050 0.1578045444 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
13 Hb_001622_020 0.1581074946 - - -
14 Hb_005332_050 0.1630957429 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
15 Hb_002217_390 0.1639678826 - - PREDICTED: galactokinase [Jatropha curcas]
16 Hb_000714_120 0.1640719624 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
17 Hb_001607_070 0.1654226013 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
18 Hb_007875_020 0.1655243547 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
19 Hb_167211_010 0.1676787037 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
20 Hb_003992_220 0.1679754619 - - s-receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001971_050 Hb_001971_050 Hb_001737_040 Hb_001737_040 Hb_001971_050--Hb_001737_040 Hb_029510_090 Hb_029510_090 Hb_001971_050--Hb_029510_090 Hb_001778_040 Hb_001778_040 Hb_001971_050--Hb_001778_040 Hb_013848_030 Hb_013848_030 Hb_001971_050--Hb_013848_030 Hb_000254_060 Hb_000254_060 Hb_001971_050--Hb_000254_060 Hb_004785_090 Hb_004785_090 Hb_001971_050--Hb_004785_090 Hb_000714_120 Hb_000714_120 Hb_001737_040--Hb_000714_120 Hb_002888_050 Hb_002888_050 Hb_001737_040--Hb_002888_050 Hb_000392_490 Hb_000392_490 Hb_001737_040--Hb_000392_490 Hb_005332_050 Hb_005332_050 Hb_001737_040--Hb_005332_050 Hb_002110_090 Hb_002110_090 Hb_001737_040--Hb_002110_090 Hb_007875_020 Hb_007875_020 Hb_029510_090--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_029510_090--Hb_065521_010 Hb_168319_060 Hb_168319_060 Hb_029510_090--Hb_168319_060 Hb_007386_030 Hb_007386_030 Hb_029510_090--Hb_007386_030 Hb_002448_020 Hb_002448_020 Hb_029510_090--Hb_002448_020 Hb_029510_090--Hb_000254_060 Hb_001622_020 Hb_001622_020 Hb_001778_040--Hb_001622_020 Hb_000054_130 Hb_000054_130 Hb_001778_040--Hb_000054_130 Hb_167211_010 Hb_167211_010 Hb_001778_040--Hb_167211_010 Hb_001778_040--Hb_000254_060 Hb_003992_220 Hb_003992_220 Hb_001778_040--Hb_003992_220 Hb_001629_050 Hb_001629_050 Hb_001778_040--Hb_001629_050 Hb_003640_010 Hb_003640_010 Hb_013848_030--Hb_003640_010 Hb_188281_050 Hb_188281_050 Hb_013848_030--Hb_188281_050 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_000215_250 Hb_000215_250 Hb_013848_030--Hb_000215_250 Hb_003085_080 Hb_003085_080 Hb_013848_030--Hb_003085_080 Hb_002811_020 Hb_002811_020 Hb_013848_030--Hb_002811_020 Hb_000254_060--Hb_001622_020 Hb_000254_060--Hb_168319_060 Hb_000254_060--Hb_065521_010 Hb_000254_060--Hb_000054_130 Hb_164117_010 Hb_164117_010 Hb_004785_090--Hb_164117_010 Hb_085315_010 Hb_085315_010 Hb_004785_090--Hb_085315_010 Hb_116194_010 Hb_116194_010 Hb_004785_090--Hb_116194_010 Hb_001430_090 Hb_001430_090 Hb_004785_090--Hb_001430_090 Hb_000127_080 Hb_000127_080 Hb_004785_090--Hb_000127_080 Hb_020805_190 Hb_020805_190 Hb_004785_090--Hb_020805_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0283163 0.137989 0.15041 0.451499 0 0.0338391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.5176 0.515235

CAGE analysis