Hb_006538_190

Information

Type -
Description -
Location Contig6538: 153928-156684
Sequence    

Annotation

kegg
ID rcu:RCOM_0030180
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative (EC:2.1.1.10)
nr
ID XP_012082088.1
description PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
swissprot
ID A4ZGQ8
description Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1
trembl
ID A0A067KC42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18325 PE=4 SV=1
Gene Ontology
ID GO:0005737
description homocysteine s-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52620: 154038-154438 , PASA_asmbl_52621: 154600-155894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_190 0.0 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
2 Hb_017170_030 0.1003496446 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
3 Hb_000614_170 0.1628925306 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
4 Hb_162275_020 0.1753155494 - - phosphate transporter [Manihot esculenta]
5 Hb_001699_200 0.1875473934 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
6 Hb_007153_040 0.1888210516 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
7 Hb_000317_420 0.1895692438 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
8 Hb_002835_340 0.1972072088 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
9 Hb_000297_020 0.1974474853 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
10 Hb_029921_030 0.1987887413 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007441_240 0.1994087421 - - ethphon-induced protein [Hevea brasiliensis]
12 Hb_002774_110 0.2007174607 - - heat shock protein binding protein, putative [Ricinus communis]
13 Hb_029385_010 0.2013697101 - - CTP synthase family protein [Populus trichocarpa]
14 Hb_002768_090 0.2039122954 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
15 Hb_000723_170 0.2053473539 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
16 Hb_100147_010 0.2065917235 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_000270_740 0.2081530017 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
18 Hb_001433_110 0.2085816102 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
19 Hb_017491_020 0.2126449399 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
20 Hb_000320_300 0.2145779553 - - prephenate dehydratase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006538_190 Hb_006538_190 Hb_017170_030 Hb_017170_030 Hb_006538_190--Hb_017170_030 Hb_000614_170 Hb_000614_170 Hb_006538_190--Hb_000614_170 Hb_162275_020 Hb_162275_020 Hb_006538_190--Hb_162275_020 Hb_001699_200 Hb_001699_200 Hb_006538_190--Hb_001699_200 Hb_007153_040 Hb_007153_040 Hb_006538_190--Hb_007153_040 Hb_000317_420 Hb_000317_420 Hb_006538_190--Hb_000317_420 Hb_000297_020 Hb_000297_020 Hb_017170_030--Hb_000297_020 Hb_017170_030--Hb_162275_020 Hb_017170_030--Hb_000614_170 Hb_000723_170 Hb_000723_170 Hb_017170_030--Hb_000723_170 Hb_017170_030--Hb_007153_040 Hb_000614_170--Hb_001699_200 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_162275_020--Hb_000297_020 Hb_162275_020--Hb_000614_170 Hb_000732_210 Hb_000732_210 Hb_162275_020--Hb_000732_210 Hb_000005_400 Hb_000005_400 Hb_162275_020--Hb_000005_400 Hb_000011_290 Hb_000011_290 Hb_001699_200--Hb_000011_290 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060 Hb_004064_010 Hb_004064_010 Hb_007153_040--Hb_004064_010 Hb_007153_040--Hb_000297_020 Hb_105602_010 Hb_105602_010 Hb_007153_040--Hb_105602_010 Hb_007153_040--Hb_000320_300 Hb_003266_100 Hb_003266_100 Hb_007153_040--Hb_003266_100 Hb_006836_030 Hb_006836_030 Hb_000317_420--Hb_006836_030 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_000317_420--Hb_000723_170 Hb_001975_040 Hb_001975_040 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0920834 0.459586 0.807234 1.89035 0.0357213 0.0389332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.8837 2.58186 1.29105 3.66183 0.615464

CAGE analysis