Hb_000012_040

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig12: 130634-131362
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25060g
description POPTRDRAFT_561710; hypothetical protein
nr
ID XP_011019548.1
description PREDICTED: transcription factor RAX2-like [Populus euphratica]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9HE03
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25060g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05975: 130488-130857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_040 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
2 Hb_000140_190 0.2181794378 - - acc synthase, putative [Ricinus communis]
3 Hb_002057_010 0.2347433692 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_001691_030 0.2391187764 - - lipoxygenase, putative [Ricinus communis]
5 Hb_001691_220 0.244702496 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
6 Hb_000143_020 0.2509934283 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
7 Hb_000094_240 0.2535445583 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
8 Hb_001579_290 0.2612945946 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
9 Hb_004449_020 0.2664850448 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
10 Hb_004976_050 0.2667047002 - - -
11 Hb_000748_070 0.2715398756 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
12 Hb_026650_010 0.2745544024 - - nitrate transporter, putative [Ricinus communis]
13 Hb_002849_090 0.2816822839 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
14 Hb_005000_040 0.2834543206 - - ACC oxidase ACCO2 [Manihot esculenta]
15 Hb_032621_010 0.2901008235 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
16 Hb_010931_020 0.2908891167 - - Kunitz-type protease inhibitor KPI-F4 [Populus trichocarpa x Populus deltoides]
17 Hb_003392_030 0.2917835093 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007101_210 0.2933572374 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000815_280 0.2964476473 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
20 Hb_001268_330 0.3060878219 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000012_040 Hb_000012_040 Hb_000140_190 Hb_000140_190 Hb_000012_040--Hb_000140_190 Hb_002057_010 Hb_002057_010 Hb_000012_040--Hb_002057_010 Hb_001691_030 Hb_001691_030 Hb_000012_040--Hb_001691_030 Hb_001691_220 Hb_001691_220 Hb_000012_040--Hb_001691_220 Hb_000143_020 Hb_000143_020 Hb_000012_040--Hb_000143_020 Hb_000094_240 Hb_000094_240 Hb_000012_040--Hb_000094_240 Hb_000748_070 Hb_000748_070 Hb_000140_190--Hb_000748_070 Hb_000140_190--Hb_002057_010 Hb_107201_010 Hb_107201_010 Hb_000140_190--Hb_107201_010 Hb_148435_010 Hb_148435_010 Hb_000140_190--Hb_148435_010 Hb_003392_030 Hb_003392_030 Hb_000140_190--Hb_003392_030 Hb_000471_080 Hb_000471_080 Hb_000140_190--Hb_000471_080 Hb_005000_040 Hb_005000_040 Hb_002057_010--Hb_005000_040 Hb_002057_010--Hb_000748_070 Hb_007044_070 Hb_007044_070 Hb_002057_010--Hb_007044_070 Hb_001268_330 Hb_001268_330 Hb_002057_010--Hb_001268_330 Hb_000256_100 Hb_000256_100 Hb_002057_010--Hb_000256_100 Hb_001579_290 Hb_001579_290 Hb_001691_030--Hb_001579_290 Hb_002849_090 Hb_002849_090 Hb_001691_030--Hb_002849_090 Hb_001691_030--Hb_001268_330 Hb_002603_030 Hb_002603_030 Hb_001691_030--Hb_002603_030 Hb_004976_050 Hb_004976_050 Hb_001691_030--Hb_004976_050 Hb_000815_280 Hb_000815_280 Hb_001691_030--Hb_000815_280 Hb_027242_010 Hb_027242_010 Hb_001691_220--Hb_027242_010 Hb_001691_220--Hb_001579_290 Hb_002081_220 Hb_002081_220 Hb_001691_220--Hb_002081_220 Hb_000086_720 Hb_000086_720 Hb_001691_220--Hb_000086_720 Hb_187211_010 Hb_187211_010 Hb_001691_220--Hb_187211_010 Hb_001377_480 Hb_001377_480 Hb_001691_220--Hb_001377_480 Hb_010931_020 Hb_010931_020 Hb_000143_020--Hb_010931_020 Hb_026650_010 Hb_026650_010 Hb_000143_020--Hb_026650_010 Hb_032621_010 Hb_032621_010 Hb_000143_020--Hb_032621_010 Hb_000143_020--Hb_003392_030 Hb_162557_010 Hb_162557_010 Hb_000143_020--Hb_162557_010 Hb_163206_010 Hb_163206_010 Hb_000094_240--Hb_163206_010 Hb_000926_100 Hb_000926_100 Hb_000094_240--Hb_000926_100 Hb_000085_390 Hb_000085_390 Hb_000094_240--Hb_000085_390 Hb_000094_240--Hb_000143_020 Hb_007672_030 Hb_007672_030 Hb_000094_240--Hb_007672_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.51728 0.427733 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0764943 0.360835 0.862317 4.25032 0.119521

CAGE analysis