Hb_163206_010

Information

Type -
Description -
Location Contig163206: 2258-3835
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID KDP44703.1
description hypothetical protein JCGZ_01203 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0016787
description leucine-rich repeat-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163206_010 0.0 - - hypothetical protein JCGZ_01203 [Jatropha curcas]
2 Hb_000094_240 0.2272813146 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
3 Hb_007157_030 0.2288241231 - - PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]
4 Hb_000450_160 0.2801019382 - - hypothetical protein JCGZ_16746 [Jatropha curcas]
5 Hb_000926_100 0.2841873151 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
6 Hb_000117_100 0.2890783046 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002998_070 0.2939525935 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
8 Hb_014720_090 0.3042789721 - - -
9 Hb_007153_040 0.3083372884 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
10 Hb_007975_050 0.3099131181 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
11 Hb_029921_030 0.3132725931 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007672_030 0.3168713094 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
13 Hb_002774_110 0.3212344152 - - heat shock protein binding protein, putative [Ricinus communis]
14 Hb_002284_190 0.3243651869 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
15 Hb_001776_190 0.3259332362 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
16 Hb_000671_160 0.3266771787 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_001623_090 0.3274717668 - - PREDICTED: probable serine incorporator [Jatropha curcas]
18 Hb_021576_020 0.3291667772 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
19 Hb_001930_040 0.330992404 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
20 Hb_000732_210 0.3318031069 - - hexose transporter 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_163206_010 Hb_163206_010 Hb_000094_240 Hb_000094_240 Hb_163206_010--Hb_000094_240 Hb_007157_030 Hb_007157_030 Hb_163206_010--Hb_007157_030 Hb_000450_160 Hb_000450_160 Hb_163206_010--Hb_000450_160 Hb_000926_100 Hb_000926_100 Hb_163206_010--Hb_000926_100 Hb_000117_100 Hb_000117_100 Hb_163206_010--Hb_000117_100 Hb_002998_070 Hb_002998_070 Hb_163206_010--Hb_002998_070 Hb_000012_040 Hb_000012_040 Hb_000094_240--Hb_000012_040 Hb_000094_240--Hb_000926_100 Hb_000085_390 Hb_000085_390 Hb_000094_240--Hb_000085_390 Hb_000143_020 Hb_000143_020 Hb_000094_240--Hb_000143_020 Hb_007672_030 Hb_007672_030 Hb_000094_240--Hb_007672_030 Hb_012371_010 Hb_012371_010 Hb_007157_030--Hb_012371_010 Hb_008438_010 Hb_008438_010 Hb_007157_030--Hb_008438_010 Hb_002660_060 Hb_002660_060 Hb_007157_030--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_007157_030--Hb_000671_160 Hb_007157_030--Hb_000117_100 Hb_000450_160--Hb_002998_070 Hb_000450_160--Hb_000926_100 Hb_006538_190 Hb_006538_190 Hb_000450_160--Hb_006538_190 Hb_004724_450 Hb_004724_450 Hb_000450_160--Hb_004724_450 Hb_001675_030 Hb_001675_030 Hb_000450_160--Hb_001675_030 Hb_000270_740 Hb_000270_740 Hb_000450_160--Hb_000270_740 Hb_001623_090 Hb_001623_090 Hb_000926_100--Hb_001623_090 Hb_003972_060 Hb_003972_060 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_000926_100--Hb_002998_070 Hb_003680_210 Hb_003680_210 Hb_000926_100--Hb_003680_210 Hb_003777_360 Hb_003777_360 Hb_000117_100--Hb_003777_360 Hb_000732_210 Hb_000732_210 Hb_000117_100--Hb_000732_210 Hb_007885_050 Hb_007885_050 Hb_000117_100--Hb_007885_050 Hb_009974_020 Hb_009974_020 Hb_000117_100--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_000117_100--Hb_000836_490 Hb_004787_040 Hb_004787_040 Hb_000117_100--Hb_004787_040 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0217284 0.0390407 0.0424872 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0469224 0.0855639 0.0757405 0

CAGE analysis