Hb_007157_030

Information

Type -
Description -
Location Contig7157: 75928-76809
Sequence    

Annotation

kegg
ID rcu:RCOM_0711490
description hypothetical protein
nr
ID XP_012077061.1
description PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]
swissprot
ID Q9ZUF7
description Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910 PE=2 SV=1
trembl
ID A0A067KQ19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07495 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55438: 75895-76332 , PASA_asmbl_55439: 76414-76782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007157_030 0.0 - - PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]
2 Hb_012371_010 0.1795393121 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
3 Hb_008438_010 0.1889410923 - - PREDICTED: uncharacterized protein LOC104245771 [Nicotiana sylvestris]
4 Hb_163206_010 0.2288241231 - - hypothetical protein JCGZ_01203 [Jatropha curcas]
5 Hb_002660_060 0.2632152471 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
6 Hb_000671_160 0.2714694055 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
7 Hb_000117_100 0.2723623609 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001930_040 0.2780072645 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
9 Hb_001477_150 0.2805287588 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_010506_010 0.2870034794 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
11 Hb_012052_070 0.3070095171 - - PREDICTED: uncharacterized protein LOC105635597 [Jatropha curcas]
12 Hb_005162_100 0.3094870525 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002805_020 0.3136775139 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
14 Hb_003055_170 0.318592394 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
15 Hb_140049_010 0.3193563281 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
16 Hb_014720_090 0.3204149123 - - -
17 Hb_001080_010 0.3219662129 - - -
18 Hb_000120_150 0.3228796243 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
19 Hb_003777_360 0.327481974 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
20 Hb_002046_070 0.3276839947 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007157_030 Hb_007157_030 Hb_012371_010 Hb_012371_010 Hb_007157_030--Hb_012371_010 Hb_008438_010 Hb_008438_010 Hb_007157_030--Hb_008438_010 Hb_163206_010 Hb_163206_010 Hb_007157_030--Hb_163206_010 Hb_002660_060 Hb_002660_060 Hb_007157_030--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_007157_030--Hb_000671_160 Hb_000117_100 Hb_000117_100 Hb_007157_030--Hb_000117_100 Hb_012371_010--Hb_008438_010 Hb_012371_010--Hb_002660_060 Hb_001141_290 Hb_001141_290 Hb_012371_010--Hb_001141_290 Hb_001477_150 Hb_001477_150 Hb_012371_010--Hb_001477_150 Hb_000398_050 Hb_000398_050 Hb_012371_010--Hb_000398_050 Hb_008438_010--Hb_001477_150 Hb_008438_010--Hb_002660_060 Hb_002046_070 Hb_002046_070 Hb_008438_010--Hb_002046_070 Hb_003055_170 Hb_003055_170 Hb_008438_010--Hb_003055_170 Hb_000094_240 Hb_000094_240 Hb_163206_010--Hb_000094_240 Hb_000450_160 Hb_000450_160 Hb_163206_010--Hb_000450_160 Hb_000926_100 Hb_000926_100 Hb_163206_010--Hb_000926_100 Hb_163206_010--Hb_000117_100 Hb_002998_070 Hb_002998_070 Hb_163206_010--Hb_002998_070 Hb_002805_020 Hb_002805_020 Hb_002660_060--Hb_002805_020 Hb_002660_060--Hb_000671_160 Hb_000671_170 Hb_000671_170 Hb_002660_060--Hb_000671_170 Hb_002486_010 Hb_002486_010 Hb_002660_060--Hb_002486_010 Hb_000676_270 Hb_000676_270 Hb_002660_060--Hb_000676_270 Hb_000554_030 Hb_000554_030 Hb_002660_060--Hb_000554_030 Hb_000671_160--Hb_000671_170 Hb_000868_100 Hb_000868_100 Hb_000671_160--Hb_000868_100 Hb_002284_190 Hb_002284_190 Hb_000671_160--Hb_002284_190 Hb_000694_060 Hb_000694_060 Hb_000671_160--Hb_000694_060 Hb_000671_160--Hb_002805_020 Hb_003777_360 Hb_003777_360 Hb_000117_100--Hb_003777_360 Hb_000732_210 Hb_000732_210 Hb_000117_100--Hb_000732_210 Hb_007885_050 Hb_007885_050 Hb_000117_100--Hb_007885_050 Hb_009974_020 Hb_009974_020 Hb_000117_100--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_000117_100--Hb_000836_490 Hb_004787_040 Hb_004787_040 Hb_000117_100--Hb_004787_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.485364 0.0924078 0.57052 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.868415 1.02153 0.50275 0

CAGE analysis