Hb_001141_290

Information

Type -
Description -
Location Contig1141: 193665-194863
Sequence    

Annotation

kegg
ID pda:103718080
description uncharacterized LOC103718080
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04255: 193682-203097 , PASA_asmbl_04256: 194621-194772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_290 0.0 - - -
2 Hb_014720_090 0.2115978845 - - -
3 Hb_000866_250 0.2343811091 - - acyl-CoA thioesterase, putative [Ricinus communis]
4 Hb_094890_010 0.2424508732 - - -
5 Hb_003055_150 0.2846692088 - - serine carboxypeptidase, putative [Ricinus communis]
6 Hb_011081_040 0.3029565749 - - hypothetical protein JCGZ_20956 [Jatropha curcas]
7 Hb_001080_010 0.3037573052 - - -
8 Hb_000130_090 0.3046852924 - - Anther-specific protein LAT52 precursor, putative [Ricinus communis]
9 Hb_012371_010 0.3119076317 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
10 Hb_007672_030 0.3132235819 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
11 Hb_000003_850 0.3190074315 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
12 Hb_007120_040 0.3195936647 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000500_120 0.3202782169 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
14 Hb_011472_010 0.3328598215 - - PREDICTED: protein yippee-like [Jatropha curcas]
15 Hb_067793_010 0.3371477271 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
16 Hb_007157_030 0.3414802041 - - PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]
17 Hb_001208_010 0.3450609619 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
18 Hb_011540_030 0.3475394033 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
19 Hb_051055_010 0.3501470602 - - -
20 Hb_020712_050 0.3504293709 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001141_290 Hb_001141_290 Hb_014720_090 Hb_014720_090 Hb_001141_290--Hb_014720_090 Hb_000866_250 Hb_000866_250 Hb_001141_290--Hb_000866_250 Hb_094890_010 Hb_094890_010 Hb_001141_290--Hb_094890_010 Hb_003055_150 Hb_003055_150 Hb_001141_290--Hb_003055_150 Hb_011081_040 Hb_011081_040 Hb_001141_290--Hb_011081_040 Hb_001080_010 Hb_001080_010 Hb_001141_290--Hb_001080_010 Hb_007672_030 Hb_007672_030 Hb_014720_090--Hb_007672_030 Hb_014720_090--Hb_003055_150 Hb_163206_010 Hb_163206_010 Hb_014720_090--Hb_163206_010 Hb_014720_090--Hb_000866_250 Hb_014720_090--Hb_094890_010 Hb_000866_250--Hb_001080_010 Hb_003095_080 Hb_003095_080 Hb_000866_250--Hb_003095_080 Hb_185111_010 Hb_185111_010 Hb_000866_250--Hb_185111_010 Hb_010921_040 Hb_010921_040 Hb_000866_250--Hb_010921_040 Hb_094890_010--Hb_003055_150 Hb_000500_120 Hb_000500_120 Hb_094890_010--Hb_000500_120 Hb_080749_010 Hb_080749_010 Hb_094890_010--Hb_080749_010 Hb_094890_010--Hb_011081_040 Hb_003055_150--Hb_080749_010 Hb_011249_040 Hb_011249_040 Hb_003055_150--Hb_011249_040 Hb_003020_170 Hb_003020_170 Hb_003055_150--Hb_003020_170 Hb_011540_030 Hb_011540_030 Hb_011081_040--Hb_011540_030 Hb_134708_010 Hb_134708_010 Hb_011081_040--Hb_134708_010 Hb_000427_070 Hb_000427_070 Hb_011081_040--Hb_000427_070 Hb_067793_010 Hb_067793_010 Hb_011081_040--Hb_067793_010 Hb_001959_150 Hb_001959_150 Hb_001080_010--Hb_001959_150 Hb_007808_020 Hb_007808_020 Hb_001080_010--Hb_007808_020 Hb_000350_080 Hb_000350_080 Hb_001080_010--Hb_000350_080 Hb_005072_010 Hb_005072_010 Hb_001080_010--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_001080_010--Hb_000068_030 Hb_000594_090 Hb_000594_090 Hb_001080_010--Hb_000594_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.229309 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.13392 0.219586 0.056581 0

CAGE analysis