Hb_003020_170

Information

Type -
Description -
Location Contig3020: 108319-109377
Sequence    

Annotation

kegg
ID rcu:RCOM_1442320
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_002512746.1
description Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
swissprot
ID P28829
description Protein kinase byr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr2 PE=1 SV=1
trembl
ID B9RGN7
description Mitogen-activated protein kinase kinase kinase, putative OS=Ricinus communis GN=RCOM_1442320 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_170 0.0 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
2 Hb_007426_050 0.2000573546 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
3 Hb_001477_150 0.2237792156 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_001369_600 0.2261889444 - - kinase, putative [Ricinus communis]
5 Hb_000117_100 0.2392327174 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001488_370 0.2457109875 - - Esterase PIR7B, putative [Ricinus communis]
7 Hb_000589_160 0.247701695 - - PREDICTED: expansin-A4 [Jatropha curcas]
8 Hb_029879_090 0.2493785419 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
9 Hb_000563_260 0.2548393606 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
10 Hb_000483_090 0.2556210605 - - -
11 Hb_001141_110 0.2596465301 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
12 Hb_080749_010 0.2621211721 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
13 Hb_004100_090 0.2644550151 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
14 Hb_002067_140 0.2648568769 - - -
15 Hb_004032_260 0.2691853311 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
16 Hb_012053_050 0.2699614635 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
17 Hb_001164_030 0.2702513679 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
18 Hb_003007_010 0.2709506831 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
19 Hb_001951_250 0.2727399004 - - -
20 Hb_027337_120 0.2738627609 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003020_170 Hb_003020_170 Hb_007426_050 Hb_007426_050 Hb_003020_170--Hb_007426_050 Hb_001477_150 Hb_001477_150 Hb_003020_170--Hb_001477_150 Hb_001369_600 Hb_001369_600 Hb_003020_170--Hb_001369_600 Hb_000117_100 Hb_000117_100 Hb_003020_170--Hb_000117_100 Hb_001488_370 Hb_001488_370 Hb_003020_170--Hb_001488_370 Hb_000589_160 Hb_000589_160 Hb_003020_170--Hb_000589_160 Hb_012053_040 Hb_012053_040 Hb_007426_050--Hb_012053_040 Hb_000563_260 Hb_000563_260 Hb_007426_050--Hb_000563_260 Hb_001348_230 Hb_001348_230 Hb_007426_050--Hb_001348_230 Hb_007426_050--Hb_001369_600 Hb_029879_090 Hb_029879_090 Hb_007426_050--Hb_029879_090 Hb_141194_010 Hb_141194_010 Hb_007426_050--Hb_141194_010 Hb_008438_010 Hb_008438_010 Hb_001477_150--Hb_008438_010 Hb_000943_060 Hb_000943_060 Hb_001477_150--Hb_000943_060 Hb_001951_250 Hb_001951_250 Hb_001477_150--Hb_001951_250 Hb_000130_230 Hb_000130_230 Hb_001477_150--Hb_000130_230 Hb_002046_070 Hb_002046_070 Hb_001477_150--Hb_002046_070 Hb_002067_140 Hb_002067_140 Hb_001369_600--Hb_002067_140 Hb_012053_050 Hb_012053_050 Hb_001369_600--Hb_012053_050 Hb_001776_170 Hb_001776_170 Hb_001369_600--Hb_001776_170 Hb_001369_600--Hb_001488_370 Hb_001369_600--Hb_000589_160 Hb_003777_360 Hb_003777_360 Hb_000117_100--Hb_003777_360 Hb_000732_210 Hb_000732_210 Hb_000117_100--Hb_000732_210 Hb_007885_050 Hb_007885_050 Hb_000117_100--Hb_007885_050 Hb_009974_020 Hb_009974_020 Hb_000117_100--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_000117_100--Hb_000836_490 Hb_004787_040 Hb_004787_040 Hb_000117_100--Hb_004787_040 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_001488_370--Hb_012053_050 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001488_370--Hb_001776_170 Hb_000589_160--Hb_012053_050 Hb_012053_010 Hb_012053_010 Hb_000589_160--Hb_012053_010 Hb_004100_090 Hb_004100_090 Hb_000589_160--Hb_004100_090 Hb_002105_030 Hb_002105_030 Hb_000589_160--Hb_002105_030 Hb_027337_120 Hb_027337_120 Hb_000589_160--Hb_027337_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0206666 0.0326266 0.0832584 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0472073 0.334173 0.274367 0.0149119 0

CAGE analysis