Hb_002046_070

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2046: 92846-94335
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12790g
description POPTRDRAFT_578920; hypothetical protein
nr
ID XP_011017813.1
description PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
swissprot
ID Q93WC4
description Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2
trembl
ID A0A067K5I1
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_17040 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21074: 92799-94291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_070 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
2 Hb_004032_260 0.1703971706 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
3 Hb_012053_060 0.1734146153 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
4 Hb_006573_180 0.1850917801 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
5 Hb_023732_040 0.2400935118 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000990_060 0.2418361207 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
7 Hb_000077_060 0.2487469218 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
8 Hb_000161_150 0.2599030821 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
9 Hb_000172_570 0.2635149881 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
10 Hb_009314_010 0.2656873746 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_000802_120 0.2671207115 - - -
12 Hb_001369_450 0.2673921346 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_001930_040 0.2695795806 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
14 Hb_001477_150 0.2714760149 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_000141_030 0.2723721147 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
16 Hb_005224_010 0.2736945713 - - glycine-rich protein [Bruguiera gymnorhiza]
17 Hb_002073_120 0.275489434 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
18 Hb_000369_020 0.2760223346 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
19 Hb_001780_140 0.2761772237 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_007747_180 0.2780948965 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]

Gene co-expression network

sample Hb_002046_070 Hb_002046_070 Hb_004032_260 Hb_004032_260 Hb_002046_070--Hb_004032_260 Hb_012053_060 Hb_012053_060 Hb_002046_070--Hb_012053_060 Hb_006573_180 Hb_006573_180 Hb_002046_070--Hb_006573_180 Hb_023732_040 Hb_023732_040 Hb_002046_070--Hb_023732_040 Hb_000990_060 Hb_000990_060 Hb_002046_070--Hb_000990_060 Hb_000077_060 Hb_000077_060 Hb_002046_070--Hb_000077_060 Hb_001369_450 Hb_001369_450 Hb_004032_260--Hb_001369_450 Hb_004032_260--Hb_012053_060 Hb_012545_050 Hb_012545_050 Hb_004032_260--Hb_012545_050 Hb_017434_050 Hb_017434_050 Hb_004032_260--Hb_017434_050 Hb_005224_010 Hb_005224_010 Hb_004032_260--Hb_005224_010 Hb_000538_180 Hb_000538_180 Hb_012053_060--Hb_000538_180 Hb_001780_140 Hb_001780_140 Hb_012053_060--Hb_001780_140 Hb_117807_010 Hb_117807_010 Hb_012053_060--Hb_117807_010 Hb_000140_360 Hb_000140_360 Hb_012053_060--Hb_000140_360 Hb_006573_180--Hb_004032_260 Hb_006573_180--Hb_012053_060 Hb_000141_030 Hb_000141_030 Hb_006573_180--Hb_000141_030 Hb_000172_570 Hb_000172_570 Hb_006573_180--Hb_000172_570 Hb_006573_180--Hb_023732_040 Hb_000477_080 Hb_000477_080 Hb_023732_040--Hb_000477_080 Hb_023732_040--Hb_000172_570 Hb_001277_090 Hb_001277_090 Hb_023732_040--Hb_001277_090 Hb_004460_010 Hb_004460_010 Hb_023732_040--Hb_004460_010 Hb_009314_010 Hb_009314_010 Hb_023732_040--Hb_009314_010 Hb_000094_130 Hb_000094_130 Hb_023732_040--Hb_000094_130 Hb_024468_020 Hb_024468_020 Hb_000990_060--Hb_024468_020 Hb_000016_190 Hb_000016_190 Hb_000990_060--Hb_000016_190 Hb_003777_050 Hb_003777_050 Hb_000990_060--Hb_003777_050 Hb_000239_020 Hb_000239_020 Hb_000990_060--Hb_000239_020 Hb_055101_010 Hb_055101_010 Hb_000990_060--Hb_055101_010 Hb_004785_140 Hb_004785_140 Hb_000990_060--Hb_004785_140 Hb_006153_080 Hb_006153_080 Hb_000077_060--Hb_006153_080 Hb_008760_010 Hb_008760_010 Hb_000077_060--Hb_008760_010 Hb_007747_180 Hb_007747_180 Hb_000077_060--Hb_007747_180 Hb_004020_060 Hb_004020_060 Hb_000077_060--Hb_004020_060 Hb_005408_050 Hb_005408_050 Hb_000077_060--Hb_005408_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182957 1.98626 0.185042 1.16114 0.0407764 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48819 2.81658 9.46724 1.5274 0.225565

CAGE analysis