Hb_001780_140

Information

Type -
Description -
Location Contig1780: 129152-131364
Sequence    

Annotation

kegg
ID tcc:TCM_041702
description Uncharacterized protein isoform 1
nr
ID XP_007016229.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GWP9
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041702 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_140 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_012053_060 0.1722949798 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
3 Hb_000084_320 0.2007852015 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
4 Hb_005054_270 0.2028197156 - - -
5 Hb_000771_130 0.2101115032 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_012053_040 0.2129589509 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
7 Hb_000479_080 0.2135755432 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_000963_140 0.218161613 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_010931_050 0.2183384879 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
10 Hb_009005_050 0.2191717041 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
11 Hb_000140_360 0.219403083 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
12 Hb_000141_030 0.2206994202 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
13 Hb_000111_010 0.2231796066 - - DNA-directed RNA polymerase, putative [Ricinus communis]
14 Hb_000723_190 0.2236011169 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_000069_660 0.2247690443 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
16 Hb_000363_150 0.2282383679 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
17 Hb_000161_150 0.2282436721 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
18 Hb_000538_180 0.2307491303 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
19 Hb_004032_260 0.2315513076 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
20 Hb_001894_170 0.2345087744 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001780_140 Hb_001780_140 Hb_012053_060 Hb_012053_060 Hb_001780_140--Hb_012053_060 Hb_000084_320 Hb_000084_320 Hb_001780_140--Hb_000084_320 Hb_005054_270 Hb_005054_270 Hb_001780_140--Hb_005054_270 Hb_000771_130 Hb_000771_130 Hb_001780_140--Hb_000771_130 Hb_012053_040 Hb_012053_040 Hb_001780_140--Hb_012053_040 Hb_000479_080 Hb_000479_080 Hb_001780_140--Hb_000479_080 Hb_000538_180 Hb_000538_180 Hb_012053_060--Hb_000538_180 Hb_002046_070 Hb_002046_070 Hb_012053_060--Hb_002046_070 Hb_004032_260 Hb_004032_260 Hb_012053_060--Hb_004032_260 Hb_117807_010 Hb_117807_010 Hb_012053_060--Hb_117807_010 Hb_000140_360 Hb_000140_360 Hb_012053_060--Hb_000140_360 Hb_000836_130 Hb_000836_130 Hb_000084_320--Hb_000836_130 Hb_001348_120 Hb_001348_120 Hb_000084_320--Hb_001348_120 Hb_010931_050 Hb_010931_050 Hb_000084_320--Hb_010931_050 Hb_000784_030 Hb_000784_030 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_006342_020 Hb_006342_020 Hb_005054_270--Hb_006342_020 Hb_001123_100 Hb_001123_100 Hb_005054_270--Hb_001123_100 Hb_000302_290 Hb_000302_290 Hb_005054_270--Hb_000302_290 Hb_005144_110 Hb_005144_110 Hb_005054_270--Hb_005144_110 Hb_006738_030 Hb_006738_030 Hb_005054_270--Hb_006738_030 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000161_150 Hb_000161_150 Hb_000771_130--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_000771_130--Hb_000432_050 Hb_009314_010 Hb_009314_010 Hb_000771_130--Hb_009314_010 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040 Hb_007426_050 Hb_007426_050 Hb_012053_040--Hb_007426_050 Hb_001511_140 Hb_001511_140 Hb_012053_040--Hb_001511_140 Hb_000788_080 Hb_000788_080 Hb_012053_040--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_012053_040--Hb_001776_170 Hb_001143_070 Hb_001143_070 Hb_012053_040--Hb_001143_070 Hb_000111_010 Hb_000111_010 Hb_012053_040--Hb_000111_010 Hb_001135_210 Hb_001135_210 Hb_000479_080--Hb_001135_210 Hb_000479_080--Hb_000836_130 Hb_000069_660 Hb_000069_660 Hb_000479_080--Hb_000069_660 Hb_000479_080--Hb_005839_110 Hb_000479_080--Hb_000784_030 Hb_002182_030 Hb_002182_030 Hb_000479_080--Hb_002182_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0334173 0.030543 0.102484 0.132329 0.117241 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.495778 1.17 2.01427 0.288157 0.249045

CAGE analysis