Hb_000479_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig479: 58049-59791
Sequence    

Annotation

kegg
ID rcu:RCOM_0524660
description zinc finger protein, putative
nr
ID XP_002526088.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SSW1
description Zinc finger protein AZF1 OS=Arabidopsis thaliana GN=AZF1 PE=2 SV=1
trembl
ID B9SJB9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0524660 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44608: 58924-59295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_080 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_001135_210 0.1482043632 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
3 Hb_000836_130 0.1520833949 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
4 Hb_000069_660 0.1582114102 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
5 Hb_005839_110 0.1634602864 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
6 Hb_000784_030 0.1636304173 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
7 Hb_002182_030 0.1649579373 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
8 Hb_000530_070 0.1713456425 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
9 Hb_003581_220 0.1730938055 - - unnamed protein product [Vitis vinifera]
10 Hb_000963_140 0.1741442547 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000084_320 0.174762292 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
12 Hb_021443_080 0.174931049 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
13 Hb_002876_370 0.1764815383 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
14 Hb_003581_260 0.1772010124 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
15 Hb_000802_100 0.1774045209 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
16 Hb_092107_010 0.1796450308 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000368_060 0.1797723534 - - thioredoxin H-type 6 [Hevea brasiliensis]
18 Hb_000061_300 0.1799295461 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
19 Hb_003086_060 0.1809666112 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
20 Hb_009485_010 0.1822314658 - - PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_080 Hb_000479_080 Hb_001135_210 Hb_001135_210 Hb_000479_080--Hb_001135_210 Hb_000836_130 Hb_000836_130 Hb_000479_080--Hb_000836_130 Hb_000069_660 Hb_000069_660 Hb_000479_080--Hb_000069_660 Hb_005839_110 Hb_005839_110 Hb_000479_080--Hb_005839_110 Hb_000784_030 Hb_000784_030 Hb_000479_080--Hb_000784_030 Hb_002182_030 Hb_002182_030 Hb_000479_080--Hb_002182_030 Hb_001232_140 Hb_001232_140 Hb_001135_210--Hb_001232_140 Hb_000099_130 Hb_000099_130 Hb_001135_210--Hb_000099_130 Hb_001135_210--Hb_002182_030 Hb_001135_210--Hb_000784_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_000836_130--Hb_000784_030 Hb_000084_320 Hb_000084_320 Hb_000836_130--Hb_000084_320 Hb_000836_130--Hb_001135_210 Hb_001357_120 Hb_001357_120 Hb_000836_130--Hb_001357_120 Hb_003581_220 Hb_003581_220 Hb_000836_130--Hb_003581_220 Hb_000836_130--Hb_000099_130 Hb_000530_070 Hb_000530_070 Hb_000069_660--Hb_000530_070 Hb_000069_660--Hb_003581_220 Hb_001846_070 Hb_001846_070 Hb_000069_660--Hb_001846_070 Hb_000069_660--Hb_002182_030 Hb_000069_660--Hb_001157_010 Hb_007594_120 Hb_007594_120 Hb_000069_660--Hb_007594_120 Hb_000162_140 Hb_000162_140 Hb_005839_110--Hb_000162_140 Hb_003147_050 Hb_003147_050 Hb_005839_110--Hb_003147_050 Hb_000061_300 Hb_000061_300 Hb_005839_110--Hb_000061_300 Hb_003929_120 Hb_003929_120 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_000432_050 Hb_000432_050 Hb_005839_110--Hb_000432_050 Hb_000562_040 Hb_000562_040 Hb_000784_030--Hb_000562_040 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_003581_260 Hb_003581_260 Hb_000784_030--Hb_003581_260 Hb_002182_030--Hb_006472_050 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_002182_030--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184712 0.124395 0.600399 0.556046 0.943929 0.997201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02682 4.41087 6.14051 0.569283 1.48145

CAGE analysis