Hb_000562_040

Information

Type -
Description -
Location Contig562: 72660-79213
Sequence    

Annotation

kegg
ID rcu:RCOM_1597120
description Auxin response factor, putative
nr
ID XP_012073833.1
description PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
swissprot
ID P93024
description Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3
trembl
ID A0A067KLD5
description Auxin response factor OS=Jatropha curcas GN=JCGZ_08238 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48864: 76895-77680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_040 0.0 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
2 Hb_000368_060 0.0948936297 - - thioredoxin H-type 6 [Hevea brasiliensis]
3 Hb_000784_030 0.0980074854 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
4 Hb_003581_260 0.1097531538 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
5 Hb_001135_210 0.1169862271 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
6 Hb_024714_060 0.1179822699 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
7 Hb_005614_050 0.1201509286 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
8 Hb_003504_020 0.1279103727 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
9 Hb_007429_030 0.130144469 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
10 Hb_001159_080 0.1323337514 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
11 Hb_005539_240 0.1331654676 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
12 Hb_000103_110 0.1351352859 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_002290_040 0.1360768119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007382_150 0.1362630515 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
15 Hb_000432_050 0.1369369916 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
16 Hb_002756_020 0.1370051377 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
17 Hb_001232_140 0.1377849624 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
18 Hb_020301_040 0.1406739252 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
19 Hb_005839_110 0.1409166435 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
20 Hb_001157_010 0.1414626015 - - deoxyhypusine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000562_040 Hb_000562_040 Hb_000368_060 Hb_000368_060 Hb_000562_040--Hb_000368_060 Hb_000784_030 Hb_000784_030 Hb_000562_040--Hb_000784_030 Hb_003581_260 Hb_003581_260 Hb_000562_040--Hb_003581_260 Hb_001135_210 Hb_001135_210 Hb_000562_040--Hb_001135_210 Hb_024714_060 Hb_024714_060 Hb_000562_040--Hb_024714_060 Hb_005614_050 Hb_005614_050 Hb_000562_040--Hb_005614_050 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000368_060--Hb_000784_030 Hb_000103_110 Hb_000103_110 Hb_000368_060--Hb_000103_110 Hb_000368_060--Hb_003581_260 Hb_011360_080 Hb_011360_080 Hb_000368_060--Hb_011360_080 Hb_000784_030--Hb_001135_210 Hb_000836_130 Hb_000836_130 Hb_000784_030--Hb_000836_130 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_000784_030--Hb_003581_260 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_003581_260--Hb_001135_210 Hb_001135_210--Hb_001232_140 Hb_000099_130 Hb_000099_130 Hb_001135_210--Hb_000099_130 Hb_001135_210--Hb_002182_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_001006_180 Hb_001006_180 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_024714_060--Hb_007594_120 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030 Hb_007161_010 Hb_007161_010 Hb_005614_050--Hb_007161_010 Hb_002756_020 Hb_002756_020 Hb_005614_050--Hb_002756_020 Hb_003551_050 Hb_003551_050 Hb_005614_050--Hb_003551_050 Hb_000363_200 Hb_000363_200 Hb_005614_050--Hb_000363_200 Hb_001538_140 Hb_001538_140 Hb_005614_050--Hb_001538_140 Hb_006594_020 Hb_006594_020 Hb_005614_050--Hb_006594_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54026 2.08759 2.73276 3.13718 5.30375 4.19673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7657 21.6182 35.2458 4.33681 1.37578

CAGE analysis