Hb_010931_050

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig10931: 33705-49720
Sequence    

Annotation

kegg
ID vvi:100244450
description lysine-specific demethylase JMJ25-like
nr
ID XP_012084676.1
description PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067JWX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21009 PE=4 SV=1
Gene Ontology
ID GO:0046872
description lysine-specific demethylase jmj25-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02819: 35869-36095 , PASA_asmbl_02820: 36975-40464 , PASA_asmbl_02822: 41620-41953 , PASA_asmbl_02823: 44300-49670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_050 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
2 Hb_000836_130 0.120889912 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
3 Hb_000784_030 0.1214326694 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
4 Hb_000141_030 0.1312901477 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
5 Hb_001357_120 0.141490204 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
6 Hb_000084_320 0.1423433465 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
7 Hb_000963_140 0.1456871118 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000099_130 0.1528548373 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
9 Hb_000196_080 0.155602049 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
10 Hb_001135_210 0.1688511003 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
11 Hb_001159_080 0.1694903455 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
12 Hb_002774_050 0.1710585659 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
13 Hb_001232_140 0.1740436584 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
14 Hb_000161_150 0.1748640159 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
15 Hb_000562_040 0.1756635721 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
16 Hb_000424_210 0.1759127702 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
17 Hb_000141_020 0.1760993328 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
18 Hb_003581_260 0.1761637685 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
19 Hb_000771_130 0.1763321638 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_000432_050 0.1765173615 - - GTP-binding protein typa/bipa, putative [Ricinus communis]

Gene co-expression network

sample Hb_010931_050 Hb_010931_050 Hb_000836_130 Hb_000836_130 Hb_010931_050--Hb_000836_130 Hb_000784_030 Hb_000784_030 Hb_010931_050--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_010931_050--Hb_000141_030 Hb_001357_120 Hb_001357_120 Hb_010931_050--Hb_001357_120 Hb_000084_320 Hb_000084_320 Hb_010931_050--Hb_000084_320 Hb_000963_140 Hb_000963_140 Hb_010931_050--Hb_000963_140 Hb_000836_130--Hb_000784_030 Hb_000836_130--Hb_000084_320 Hb_001135_210 Hb_001135_210 Hb_000836_130--Hb_001135_210 Hb_000836_130--Hb_001357_120 Hb_003581_220 Hb_003581_220 Hb_000836_130--Hb_003581_220 Hb_000099_130 Hb_000099_130 Hb_000836_130--Hb_000099_130 Hb_000562_040 Hb_000562_040 Hb_000784_030--Hb_000562_040 Hb_000784_030--Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_003581_260 Hb_003581_260 Hb_000784_030--Hb_003581_260 Hb_000141_030--Hb_000963_140 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_001519_030 Hb_001519_030 Hb_001357_120--Hb_001519_030 Hb_002260_030 Hb_002260_030 Hb_001357_120--Hb_002260_030 Hb_000424_210 Hb_000424_210 Hb_001357_120--Hb_000424_210 Hb_000196_080 Hb_000196_080 Hb_001357_120--Hb_000196_080 Hb_001218_040 Hb_001218_040 Hb_001357_120--Hb_001218_040 Hb_001348_120 Hb_001348_120 Hb_000084_320--Hb_001348_120 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_000963_140--Hb_000099_130 Hb_001159_080 Hb_001159_080 Hb_000963_140--Hb_001159_080 Hb_000963_140--Hb_000836_130 Hb_000963_140--Hb_001135_210 Hb_000963_140--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.601834 0.979514 0.723094 0.593386 0.329673 0.363531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37736 4.34163 8.03112 1.35824 1.1405

CAGE analysis