Hb_000538_180

Information

Type -
Description -
Location Contig538: 178849-194483
Sequence    

Annotation

kegg
ID rcu:RCOM_0763470
description amine oxidase, putative (EC:1.4.3.4)
nr
ID XP_012074697.1
description PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
swissprot
ID Q8H191
description Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1
trembl
ID A0A067KL71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10475 PE=4 SV=1
Gene Ontology
ID GO:0016491
description probable polyamine oxidase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47670: 188308-188576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_180 0.0 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
2 Hb_012053_060 0.1532859183 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
3 Hb_117807_010 0.1883402037 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
4 Hb_000130_110 0.2004135946 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
5 Hb_000140_360 0.2085393136 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
6 Hb_008760_010 0.2088713335 - - berberine bridge enzyme [Hevea brasiliensis]
7 Hb_009005_050 0.2146432596 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
8 Hb_005066_080 0.2294876648 - - hypothetical protein PRUPE_ppa025081mg [Prunus persica]
9 Hb_001780_140 0.2307491303 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_001195_360 0.2324545066 - - PREDICTED: random slug protein 5 [Jatropha curcas]
11 Hb_009707_030 0.2422100533 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
12 Hb_001287_010 0.2439390718 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
13 Hb_005060_020 0.2450536316 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
14 Hb_005489_100 0.2533247913 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002150_060 0.2544178231 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
16 Hb_001102_210 0.2552281329 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
17 Hb_002078_440 0.2563731896 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
18 Hb_012163_020 0.2578595175 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
19 Hb_001930_040 0.2595697766 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
20 Hb_000170_120 0.2599616161 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000538_180 Hb_000538_180 Hb_012053_060 Hb_012053_060 Hb_000538_180--Hb_012053_060 Hb_117807_010 Hb_117807_010 Hb_000538_180--Hb_117807_010 Hb_000130_110 Hb_000130_110 Hb_000538_180--Hb_000130_110 Hb_000140_360 Hb_000140_360 Hb_000538_180--Hb_000140_360 Hb_008760_010 Hb_008760_010 Hb_000538_180--Hb_008760_010 Hb_009005_050 Hb_009005_050 Hb_000538_180--Hb_009005_050 Hb_001780_140 Hb_001780_140 Hb_012053_060--Hb_001780_140 Hb_002046_070 Hb_002046_070 Hb_012053_060--Hb_002046_070 Hb_004032_260 Hb_004032_260 Hb_012053_060--Hb_004032_260 Hb_012053_060--Hb_117807_010 Hb_012053_060--Hb_000140_360 Hb_000170_120 Hb_000170_120 Hb_117807_010--Hb_000170_120 Hb_012163_020 Hb_012163_020 Hb_117807_010--Hb_012163_020 Hb_117807_010--Hb_000140_360 Hb_000815_290 Hb_000815_290 Hb_117807_010--Hb_000815_290 Hb_000340_310 Hb_000340_310 Hb_117807_010--Hb_000340_310 Hb_002026_120 Hb_002026_120 Hb_117807_010--Hb_002026_120 Hb_003994_190 Hb_003994_190 Hb_000130_110--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_001102_210 Hb_001102_210 Hb_000140_360--Hb_001102_210 Hb_002078_440 Hb_002078_440 Hb_000140_360--Hb_002078_440 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_000140_360--Hb_002026_120 Hb_000140_360--Hb_000815_290 Hb_008760_010--Hb_000130_110 Hb_006153_080 Hb_006153_080 Hb_008760_010--Hb_006153_080 Hb_008760_010--Hb_001195_360 Hb_000856_150 Hb_000856_150 Hb_008760_010--Hb_000856_150 Hb_000239_020 Hb_000239_020 Hb_008760_010--Hb_000239_020 Hb_002783_110 Hb_002783_110 Hb_008760_010--Hb_002783_110 Hb_009005_050--Hb_001195_360 Hb_012799_100 Hb_012799_100 Hb_009005_050--Hb_012799_100 Hb_002205_130 Hb_002205_130 Hb_009005_050--Hb_002205_130 Hb_009005_050--Hb_000130_110 Hb_009005_050--Hb_000856_150 Hb_005060_020 Hb_005060_020 Hb_009005_050--Hb_005060_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64584 1.95406 11.3279 7.48148 0.349078 0.803804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15415 27.282 61.261 10.167 7.92501

CAGE analysis