Hb_002783_110

Information

Type -
Description -
Location Contig2783: 147159-148751
Sequence    

Annotation

kegg
ID rcu:RCOM_1598220
description Zeamatin precursor, putative
nr
ID XP_002510548.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID P50694
description Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1
trembl
ID B9R8A5
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1598220 PE=4 SV=1
Gene Ontology
ID GO:0003848
description thaumatin-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_110 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_029385_010 0.1337924498 - - CTP synthase family protein [Populus trichocarpa]
3 Hb_026889_040 0.1505967956 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_000771_060 0.1516906373 - - PREDICTED: spermine synthase [Jatropha curcas]
5 Hb_002217_100 0.1551164992 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
6 Hb_130719_010 0.1585369833 - - V-type proton ATPase subunit E [Hevea brasiliensis]
7 Hb_028049_010 0.1604055609 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000215_280 0.1616203777 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
9 Hb_002045_060 0.16240718 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
10 Hb_002876_270 0.1631552332 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
11 Hb_001153_120 0.1633862228 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
12 Hb_001242_080 0.1650907667 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
13 Hb_000614_170 0.1703566863 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
14 Hb_001510_020 0.1704250761 - - Diaminopimelate epimerase, putative [Ricinus communis]
15 Hb_000059_010 0.1710778694 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_000260_620 0.1739524338 - - Thermosensitive gluconokinase, putative [Ricinus communis]
17 Hb_000428_060 0.1741191233 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_000110_050 0.1743795311 - - -
19 Hb_001971_060 0.1746896968 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
20 Hb_010422_070 0.1749146888 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]

Gene co-expression network

sample Hb_002783_110 Hb_002783_110 Hb_029385_010 Hb_029385_010 Hb_002783_110--Hb_029385_010 Hb_026889_040 Hb_026889_040 Hb_002783_110--Hb_026889_040 Hb_000771_060 Hb_000771_060 Hb_002783_110--Hb_000771_060 Hb_002217_100 Hb_002217_100 Hb_002783_110--Hb_002217_100 Hb_130719_010 Hb_130719_010 Hb_002783_110--Hb_130719_010 Hb_028049_010 Hb_028049_010 Hb_002783_110--Hb_028049_010 Hb_100147_010 Hb_100147_010 Hb_029385_010--Hb_100147_010 Hb_001728_140 Hb_001728_140 Hb_029385_010--Hb_001728_140 Hb_001510_020 Hb_001510_020 Hb_029385_010--Hb_001510_020 Hb_000251_030 Hb_000251_030 Hb_029385_010--Hb_000251_030 Hb_001971_060 Hb_001971_060 Hb_029385_010--Hb_001971_060 Hb_000381_110 Hb_000381_110 Hb_029385_010--Hb_000381_110 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_091349_010 Hb_091349_010 Hb_026889_040--Hb_091349_010 Hb_000703_280 Hb_000703_280 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000428_060 Hb_000428_060 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_001817_100 Hb_001817_100 Hb_002217_100--Hb_001817_100 Hb_002615_030 Hb_002615_030 Hb_002217_100--Hb_002615_030 Hb_002217_100--Hb_001016_100 Hb_007590_090 Hb_007590_090 Hb_002217_100--Hb_007590_090 Hb_002045_060 Hb_002045_060 Hb_002217_100--Hb_002045_060 Hb_000964_030 Hb_000964_030 Hb_002217_100--Hb_000964_030 Hb_005496_090 Hb_005496_090 Hb_130719_010--Hb_005496_090 Hb_000056_250 Hb_000056_250 Hb_130719_010--Hb_000056_250 Hb_003291_020 Hb_003291_020 Hb_130719_010--Hb_003291_020 Hb_001123_160 Hb_001123_160 Hb_130719_010--Hb_001123_160 Hb_000685_050 Hb_000685_050 Hb_130719_010--Hb_000685_050 Hb_005054_260 Hb_005054_260 Hb_130719_010--Hb_005054_260 Hb_012305_130 Hb_012305_130 Hb_028049_010--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_028049_010--Hb_000110_120 Hb_004007_110 Hb_004007_110 Hb_028049_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_028049_010--Hb_021409_080 Hb_028049_010--Hb_000428_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05012 1.5209 6.60704 11.9494 0.63857 1.05466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1904 8.93249 14.0215 11.2884 7.01893

CAGE analysis