Hb_012163_020

Information

Type -
Description -
Location Contig12163: 21512-23734
Sequence    

Annotation

kegg
ID rcu:RCOM_1383270
description hypothetical protein
nr
ID XP_012093165.1
description PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16376 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferases isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012163_020 0.0 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
2 Hb_117807_010 0.1443081867 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
3 Hb_003097_060 0.1507818196 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
4 Hb_000170_120 0.1541535045 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001377_420 0.1648993218 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007943_190 0.1652649862 - - cytoplasmic dynein light chain, putative [Ricinus communis]
7 Hb_000340_310 0.1685672797 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_005496_090 0.1728481811 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
9 Hb_001242_050 0.1801412466 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005278_040 0.1830458204 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
11 Hb_000292_060 0.1835480126 - - transporter, putative [Ricinus communis]
12 Hb_083380_010 0.188457328 - - -
13 Hb_011472_010 0.1900081239 - - PREDICTED: protein yippee-like [Jatropha curcas]
14 Hb_000815_290 0.1906475256 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
15 Hb_023344_050 0.1916101709 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
16 Hb_025645_030 0.1919957865 - - -
17 Hb_000130_110 0.1920536124 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
18 Hb_130719_010 0.1943562139 - - V-type proton ATPase subunit E [Hevea brasiliensis]
19 Hb_000178_120 0.1957456472 - - PREDICTED: histone H2B [Jatropha curcas]
20 Hb_000059_010 0.1961195636 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012163_020 Hb_012163_020 Hb_117807_010 Hb_117807_010 Hb_012163_020--Hb_117807_010 Hb_003097_060 Hb_003097_060 Hb_012163_020--Hb_003097_060 Hb_000170_120 Hb_000170_120 Hb_012163_020--Hb_000170_120 Hb_001377_420 Hb_001377_420 Hb_012163_020--Hb_001377_420 Hb_007943_190 Hb_007943_190 Hb_012163_020--Hb_007943_190 Hb_000340_310 Hb_000340_310 Hb_012163_020--Hb_000340_310 Hb_117807_010--Hb_000170_120 Hb_000140_360 Hb_000140_360 Hb_117807_010--Hb_000140_360 Hb_000815_290 Hb_000815_290 Hb_117807_010--Hb_000815_290 Hb_117807_010--Hb_000340_310 Hb_002026_120 Hb_002026_120 Hb_117807_010--Hb_002026_120 Hb_011671_460 Hb_011671_460 Hb_003097_060--Hb_011671_460 Hb_000096_150 Hb_000096_150 Hb_003097_060--Hb_000096_150 Hb_000056_250 Hb_000056_250 Hb_003097_060--Hb_000056_250 Hb_027751_060 Hb_027751_060 Hb_003097_060--Hb_027751_060 Hb_003097_060--Hb_007943_190 Hb_000170_120--Hb_003097_060 Hb_002609_040 Hb_002609_040 Hb_000170_120--Hb_002609_040 Hb_005656_190 Hb_005656_190 Hb_000170_120--Hb_005656_190 Hb_000389_050 Hb_000389_050 Hb_000170_120--Hb_000389_050 Hb_158092_010 Hb_158092_010 Hb_001377_420--Hb_158092_010 Hb_001242_050 Hb_001242_050 Hb_001377_420--Hb_001242_050 Hb_005496_090 Hb_005496_090 Hb_001377_420--Hb_005496_090 Hb_000928_110 Hb_000928_110 Hb_001377_420--Hb_000928_110 Hb_005356_040 Hb_005356_040 Hb_001377_420--Hb_005356_040 Hb_003462_120 Hb_003462_120 Hb_001377_420--Hb_003462_120 Hb_007943_190--Hb_027751_060 Hb_007943_190--Hb_005496_090 Hb_083380_010 Hb_083380_010 Hb_007943_190--Hb_083380_010 Hb_023344_050 Hb_023344_050 Hb_007943_190--Hb_023344_050 Hb_025645_030 Hb_025645_030 Hb_007943_190--Hb_025645_030 Hb_000111_450 Hb_000111_450 Hb_000340_310--Hb_000111_450 Hb_003994_190 Hb_003994_190 Hb_000340_310--Hb_003994_190 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_000340_310--Hb_000130_110 Hb_013405_140 Hb_013405_140 Hb_000340_310--Hb_013405_140 Hb_000340_310--Hb_002026_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.394153 0.283534 1.56492 4.67608 0.750575 0.164278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16091 6.01096 8.8164 1.32246 1.42025

CAGE analysis