Hb_005656_190

Information

Type -
Description -
Location Contig5656: 145243-151471
Sequence    

Annotation

kegg
ID rcu:RCOM_0205360
description proteasome subunit beta type 6,9, putative (EC:3.4.25.1)
nr
ID XP_002527995.1
description proteasome subunit beta type 6,9, putative [Ricinus communis]
swissprot
ID Q8LD27
description Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2
trembl
ID B9SPS6
description Proteasome subunit beta type OS=Ricinus communis GN=RCOM_0205360 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_190 0.0 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
2 Hb_000200_200 0.1262080966 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
3 Hb_000340_500 0.1488433707 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
4 Hb_001141_110 0.156447789 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
5 Hb_000167_030 0.1610446094 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
6 Hb_009778_040 0.1952922939 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
7 Hb_003181_050 0.1983313438 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
8 Hb_000809_060 0.2011731169 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
9 Hb_002026_120 0.2013797499 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
10 Hb_000031_080 0.2015419513 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
11 Hb_002081_030 0.2025682029 - - unnamed protein product [Coffea canephora]
12 Hb_117807_010 0.2040749894 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
13 Hb_002802_020 0.206144907 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
14 Hb_023344_050 0.2082964174 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
15 Hb_000802_100 0.208474608 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
16 Hb_116420_020 0.2093465198 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
17 Hb_000170_120 0.2098004308 - - ATP binding protein, putative [Ricinus communis]
18 Hb_007441_260 0.2138242701 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
19 Hb_007218_150 0.2139782353 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
20 Hb_001314_040 0.2143925378 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]

Gene co-expression network

sample Hb_005656_190 Hb_005656_190 Hb_000200_200 Hb_000200_200 Hb_005656_190--Hb_000200_200 Hb_000340_500 Hb_000340_500 Hb_005656_190--Hb_000340_500 Hb_001141_110 Hb_001141_110 Hb_005656_190--Hb_001141_110 Hb_000167_030 Hb_000167_030 Hb_005656_190--Hb_000167_030 Hb_009778_040 Hb_009778_040 Hb_005656_190--Hb_009778_040 Hb_003181_050 Hb_003181_050 Hb_005656_190--Hb_003181_050 Hb_000200_200--Hb_000340_500 Hb_189216_030 Hb_189216_030 Hb_000200_200--Hb_189216_030 Hb_000130_450 Hb_000130_450 Hb_000200_200--Hb_000130_450 Hb_185224_010 Hb_185224_010 Hb_000200_200--Hb_185224_010 Hb_001959_010 Hb_001959_010 Hb_000200_200--Hb_001959_010 Hb_002081_030 Hb_002081_030 Hb_000340_500--Hb_002081_030 Hb_000809_060 Hb_000809_060 Hb_000340_500--Hb_000809_060 Hb_000258_250 Hb_000258_250 Hb_000340_500--Hb_000258_250 Hb_002686_180 Hb_002686_180 Hb_000340_500--Hb_002686_180 Hb_024074_010 Hb_024074_010 Hb_000340_500--Hb_024074_010 Hb_001726_040 Hb_001726_040 Hb_000340_500--Hb_001726_040 Hb_004129_160 Hb_004129_160 Hb_001141_110--Hb_004129_160 Hb_001369_600 Hb_001369_600 Hb_001141_110--Hb_001369_600 Hb_001141_110--Hb_000200_200 Hb_003007_010 Hb_003007_010 Hb_001141_110--Hb_003007_010 Hb_007254_080 Hb_007254_080 Hb_001141_110--Hb_007254_080 Hb_007218_150 Hb_007218_150 Hb_000167_030--Hb_007218_150 Hb_000167_030--Hb_009778_040 Hb_116420_020 Hb_116420_020 Hb_000167_030--Hb_116420_020 Hb_005663_120 Hb_005663_120 Hb_000167_030--Hb_005663_120 Hb_001232_140 Hb_001232_140 Hb_000167_030--Hb_001232_140 Hb_032969_030 Hb_032969_030 Hb_000167_030--Hb_032969_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_001386_050 Hb_001386_050 Hb_003181_050--Hb_001386_050 Hb_001785_040 Hb_001785_040 Hb_003181_050--Hb_001785_040 Hb_003181_050--Hb_032969_030 Hb_089100_020 Hb_089100_020 Hb_003181_050--Hb_089100_020 Hb_003198_010 Hb_003198_010 Hb_003181_050--Hb_003198_010 Hb_002802_020 Hb_002802_020 Hb_003181_050--Hb_002802_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15394 0.483791 8.28177 5.35449 0.299886 0.727738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.558 20.0351 14.6237 1.44349 1.1413

CAGE analysis