Hb_000130_450

Information

Type -
Description -
Location Contig130: 406728-408180
Sequence    

Annotation

kegg
ID rcu:RCOM_0649740
description hypothetical protein
nr
ID XP_002523267.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB98
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08945: 406843-407110 , PASA_asmbl_08946: 407163-407285 , PASA_asmbl_08947: 407386-408384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_450 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000200_200 0.179740706 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
3 Hb_014720_010 0.1811509416 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005375_050 0.2049796595 - - inorganic pyrophosphatase, putative [Ricinus communis]
5 Hb_000008_380 0.2131209177 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_005656_190 0.2300458537 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
7 Hb_000027_040 0.2316759759 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
8 Hb_001959_010 0.2393164059 - - myosin XI, putative [Ricinus communis]
9 Hb_000340_500 0.2463920414 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
10 Hb_000878_140 0.250745484 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
11 Hb_000329_550 0.2649906673 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
12 Hb_000394_110 0.2675458329 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_032717_020 0.2692659736 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
14 Hb_011512_160 0.2711480567 - - conserved hypothetical protein [Ricinus communis]
15 Hb_185224_010 0.271789283 - - zinc finger protein, putative [Ricinus communis]
16 Hb_001141_110 0.2744047852 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
17 Hb_048476_100 0.2764582436 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
18 Hb_014430_010 0.278875003 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
19 Hb_098533_020 0.2833500595 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
20 Hb_000487_120 0.2837109968 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000130_450 Hb_000130_450 Hb_000200_200 Hb_000200_200 Hb_000130_450--Hb_000200_200 Hb_014720_010 Hb_014720_010 Hb_000130_450--Hb_014720_010 Hb_005375_050 Hb_005375_050 Hb_000130_450--Hb_005375_050 Hb_000008_380 Hb_000008_380 Hb_000130_450--Hb_000008_380 Hb_005656_190 Hb_005656_190 Hb_000130_450--Hb_005656_190 Hb_000027_040 Hb_000027_040 Hb_000130_450--Hb_000027_040 Hb_000200_200--Hb_005656_190 Hb_000340_500 Hb_000340_500 Hb_000200_200--Hb_000340_500 Hb_189216_030 Hb_189216_030 Hb_000200_200--Hb_189216_030 Hb_185224_010 Hb_185224_010 Hb_000200_200--Hb_185224_010 Hb_001959_010 Hb_001959_010 Hb_000200_200--Hb_001959_010 Hb_014720_010--Hb_005375_050 Hb_014720_010--Hb_000008_380 Hb_011512_160 Hb_011512_160 Hb_014720_010--Hb_011512_160 Hb_000878_140 Hb_000878_140 Hb_014720_010--Hb_000878_140 Hb_004129_160 Hb_004129_160 Hb_014720_010--Hb_004129_160 Hb_003399_100 Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_005375_050--Hb_002045_190 Hb_089889_010 Hb_089889_010 Hb_005375_050--Hb_089889_010 Hb_004116_120 Hb_004116_120 Hb_005375_050--Hb_004116_120 Hb_000008_380--Hb_000878_140 Hb_000155_090 Hb_000155_090 Hb_000008_380--Hb_000155_090 Hb_000008_380--Hb_005375_050 Hb_000008_380--Hb_011512_160 Hb_005656_190--Hb_000340_500 Hb_001141_110 Hb_001141_110 Hb_005656_190--Hb_001141_110 Hb_000167_030 Hb_000167_030 Hb_005656_190--Hb_000167_030 Hb_009778_040 Hb_009778_040 Hb_005656_190--Hb_009778_040 Hb_003181_050 Hb_003181_050 Hb_005656_190--Hb_003181_050 Hb_000329_270 Hb_000329_270 Hb_000027_040--Hb_000329_270 Hb_048476_100 Hb_048476_100 Hb_000027_040--Hb_048476_100 Hb_000027_040--Hb_000340_500 Hb_032717_020 Hb_032717_020 Hb_000027_040--Hb_032717_020 Hb_000258_250 Hb_000258_250 Hb_000027_040--Hb_000258_250 Hb_006671_010 Hb_006671_010 Hb_000027_040--Hb_006671_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130924 0.155697 3.60321 0.481209 0.180165 0.049335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49604 2.8915 2.1217 0.256117 0

CAGE analysis