Hb_005375_050

Information

Type -
Description -
Location Contig5375: 59776-62349
Sequence    

Annotation

kegg
ID rcu:RCOM_1340580
description inorganic pyrophosphatase, putative (EC:3.6.1.1)
nr
ID XP_002515096.1
description inorganic pyrophosphatase, putative [Ricinus communis]
swissprot
ID Q93V56
description Soluble inorganic pyrophosphatase 1 OS=Arabidopsis thaliana GN=PPA1 PE=1 SV=1
trembl
ID B9RMV7
description Inorganic pyrophosphatase, putative OS=Ricinus communis GN=RCOM_1340580 PE=3 SV=1
Gene Ontology
ID GO:0005634
description soluble inorganic pyrophosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47613: 59769-62339
cDNA
(Sanger)
(ID:Location)		 001_H21.ab1: 59877-62346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_050 0.0 - - inorganic pyrophosphatase, putative [Ricinus communis]
2 Hb_003399_100 0.1676487853 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
3 Hb_118282_010 0.1742676137 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
4 Hb_002045_190 0.1791834765 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
5 Hb_089889_010 0.1935548099 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_014720_010 0.1994568904 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004116_120 0.2006160765 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
8 Hb_000510_230 0.2042089537 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
9 Hb_000529_150 0.2047161288 - - protein with unknown function [Ricinus communis]
10 Hb_000130_450 0.2049796595 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000025_370 0.2053460804 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
12 Hb_004116_100 0.2060504973 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
13 Hb_000152_210 0.2084203397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000008_380 0.2103521629 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_009486_210 0.2119929881 - - -
16 Hb_001975_130 0.2133105155 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
17 Hb_030627_070 0.2136919858 - - histone H4 [Zea mays]
18 Hb_004920_070 0.2149161636 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
19 Hb_001959_010 0.21964216 - - myosin XI, putative [Ricinus communis]
20 Hb_000394_110 0.2252027523 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005375_050 Hb_005375_050 Hb_003399_100 Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_005375_050--Hb_002045_190 Hb_089889_010 Hb_089889_010 Hb_005375_050--Hb_089889_010 Hb_014720_010 Hb_014720_010 Hb_005375_050--Hb_014720_010 Hb_004116_120 Hb_004116_120 Hb_005375_050--Hb_004116_120 Hb_003399_100--Hb_002045_190 Hb_030627_070 Hb_030627_070 Hb_003399_100--Hb_030627_070 Hb_006275_060 Hb_006275_060 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_003399_100--Hb_089889_010 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_000740_040 Hb_000740_040 Hb_118282_010--Hb_000740_040 Hb_006445_020 Hb_006445_020 Hb_118282_010--Hb_006445_020 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_001073_080 Hb_001073_080 Hb_118282_010--Hb_001073_080 Hb_002045_190--Hb_006275_060 Hb_002045_190--Hb_004116_120 Hb_002045_190--Hb_030627_070 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_089889_010--Hb_002045_190 Hb_001975_130 Hb_001975_130 Hb_089889_010--Hb_001975_130 Hb_001890_020 Hb_001890_020 Hb_089889_010--Hb_001890_020 Hb_089889_010--Hb_030627_070 Hb_000130_450 Hb_000130_450 Hb_014720_010--Hb_000130_450 Hb_000008_380 Hb_000008_380 Hb_014720_010--Hb_000008_380 Hb_011512_160 Hb_011512_160 Hb_014720_010--Hb_011512_160 Hb_000878_140 Hb_000878_140 Hb_014720_010--Hb_000878_140 Hb_004129_160 Hb_004129_160 Hb_014720_010--Hb_004129_160 Hb_004116_120--Hb_033594_040 Hb_000563_440 Hb_000563_440 Hb_004116_120--Hb_000563_440 Hb_002307_020 Hb_002307_020 Hb_004116_120--Hb_002307_020 Hb_004116_120--Hb_006275_060 Hb_004116_120--Hb_003399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2217 33.0196 352.453 65.4342 11.9424 10.8298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.7853 190.758 77.163 21.2715 11.4006

CAGE analysis