Hb_000878_140

Information

Type -
Description -
Location Contig878: 232676-235004
Sequence    

Annotation

kegg
ID rcu:RCOM_0422860
description cell division cycle, putative
nr
ID XP_012090884.1
description PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
swissprot
ID Q9SZA4
description Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana GN=CDC20-1 PE=1 SV=1
trembl
ID B9SDP0
description Cell division cycle, putative OS=Ricinus communis GN=RCOM_0422860 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cell division cycle cofactor of apc complex-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61314: 234219-234615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_140 0.0 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
2 Hb_000008_380 0.1946005205 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001545_070 0.2161839112 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007943_060 0.2179817995 - - Rop5 [Hevea brasiliensis]
5 Hb_007904_240 0.2237615741 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
6 Hb_014720_010 0.244608489 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000487_120 0.2469266498 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000130_450 0.250745484 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000025_170 0.2531233597 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003399_100 0.2569848718 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
11 Hb_001195_180 0.2613190245 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
12 Hb_005375_050 0.2650284781 - - inorganic pyrophosphatase, putative [Ricinus communis]
13 Hb_089889_010 0.2685887973 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_005725_150 0.2711439653 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
15 Hb_000200_200 0.2752898872 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
16 Hb_000010_300 0.2758143577 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
17 Hb_001287_010 0.278868283 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
18 Hb_009707_030 0.2798280968 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
19 Hb_001959_010 0.2798755764 - - myosin XI, putative [Ricinus communis]
20 Hb_000529_150 0.2817956196 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000878_140 Hb_000878_140 Hb_000008_380 Hb_000008_380 Hb_000878_140--Hb_000008_380 Hb_001545_070 Hb_001545_070 Hb_000878_140--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_000878_140--Hb_007943_060 Hb_007904_240 Hb_007904_240 Hb_000878_140--Hb_007904_240 Hb_014720_010 Hb_014720_010 Hb_000878_140--Hb_014720_010 Hb_000487_120 Hb_000487_120 Hb_000878_140--Hb_000487_120 Hb_000155_090 Hb_000155_090 Hb_000008_380--Hb_000155_090 Hb_000008_380--Hb_014720_010 Hb_005375_050 Hb_005375_050 Hb_000008_380--Hb_005375_050 Hb_000130_450 Hb_000130_450 Hb_000008_380--Hb_000130_450 Hb_011512_160 Hb_011512_160 Hb_000008_380--Hb_011512_160 Hb_001545_070--Hb_007943_060 Hb_000189_170 Hb_000189_170 Hb_001545_070--Hb_000189_170 Hb_022250_020 Hb_022250_020 Hb_001545_070--Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_001545_070--Hb_001221_330 Hb_001545_070--Hb_000487_120 Hb_009707_030 Hb_009707_030 Hb_001545_070--Hb_009707_030 Hb_001287_010 Hb_001287_010 Hb_007943_060--Hb_001287_010 Hb_007943_060--Hb_009707_030 Hb_032202_150 Hb_032202_150 Hb_007943_060--Hb_032202_150 Hb_007943_060--Hb_000487_120 Hb_021576_020 Hb_021576_020 Hb_007904_240--Hb_021576_020 Hb_002998_070 Hb_002998_070 Hb_007904_240--Hb_002998_070 Hb_006726_010 Hb_006726_010 Hb_007904_240--Hb_006726_010 Hb_007904_240--Hb_007943_060 Hb_000069_770 Hb_000069_770 Hb_007904_240--Hb_000069_770 Hb_014720_010--Hb_000130_450 Hb_014720_010--Hb_005375_050 Hb_014720_010--Hb_011512_160 Hb_004129_160 Hb_004129_160 Hb_014720_010--Hb_004129_160 Hb_000487_120--Hb_001221_330 Hb_005181_160 Hb_005181_160 Hb_000487_120--Hb_005181_160 Hb_000487_120--Hb_022250_020 Hb_002374_080 Hb_002374_080 Hb_000487_120--Hb_002374_080 Hb_001114_080 Hb_001114_080 Hb_000487_120--Hb_001114_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0470462 0.0360424 0.918989 0.336047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165278 0.286056 0.58516 0.114262 0

CAGE analysis