Hb_021576_020

Information

Type -
Description -
Location Contig21576: 10479-11177
Sequence    

Annotation

kegg
ID egr:104426132
description uncharacterized LOC104426132
nr
ID XP_010037382.1
description PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
swissprot
ID Q1G3T1
description TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1
trembl
ID A0A059A5T0
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02699 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22306: 3136-9772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_020 0.0 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
2 Hb_001554_010 0.1950350135 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
3 Hb_002998_070 0.2140400425 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
4 Hb_007904_240 0.2190771633 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
5 Hb_000069_770 0.2249951317 - - translation initiation factor [Rheum australe]
6 Hb_005306_010 0.2366965479 - - -
7 Hb_000926_100 0.247383908 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
8 Hb_009571_010 0.2547619427 - - early-responsive to dehydration family protein [Populus trichocarpa]
9 Hb_007672_030 0.2572389589 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
10 Hb_003464_070 0.2599646803 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
11 Hb_000457_210 0.2671667191 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
12 Hb_000010_310 0.2687870726 - - PREDICTED: probable pectate lyase 18 [Populus euphratica]
13 Hb_001638_230 0.2692099141 - - RNA-binding region-containing protein, putative [Ricinus communis]
14 Hb_000487_120 0.2721270479 - - conserved hypothetical protein [Ricinus communis]
15 Hb_075247_010 0.273346259 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
16 Hb_071130_050 0.2755739719 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
17 Hb_002194_090 0.2763839841 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000215_080 0.2778732831 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
19 Hb_000189_410 0.2797632926 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008760_010 0.2816794448 - - berberine bridge enzyme [Hevea brasiliensis]

Gene co-expression network

sample Hb_021576_020 Hb_021576_020 Hb_001554_010 Hb_001554_010 Hb_021576_020--Hb_001554_010 Hb_002998_070 Hb_002998_070 Hb_021576_020--Hb_002998_070 Hb_007904_240 Hb_007904_240 Hb_021576_020--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_021576_020--Hb_000069_770 Hb_005306_010 Hb_005306_010 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_003464_070 Hb_003464_070 Hb_001554_010--Hb_003464_070 Hb_026549_010 Hb_026549_010 Hb_001554_010--Hb_026549_010 Hb_001554_010--Hb_002998_070 Hb_010889_020 Hb_010889_020 Hb_001554_010--Hb_010889_020 Hb_023344_070 Hb_023344_070 Hb_001554_010--Hb_023344_070 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_000878_140 Hb_000878_140 Hb_007904_240--Hb_000878_140 Hb_007904_240--Hb_002998_070 Hb_006726_010 Hb_006726_010 Hb_007904_240--Hb_006726_010 Hb_007943_060 Hb_007943_060 Hb_007904_240--Hb_007943_060 Hb_007904_240--Hb_000069_770 Hb_000069_770--Hb_006726_010 Hb_000487_120 Hb_000487_120 Hb_000069_770--Hb_000487_120 Hb_000069_770--Hb_002998_070 Hb_000069_770--Hb_005306_010 Hb_001638_230 Hb_001638_230 Hb_005306_010--Hb_001638_230 Hb_005306_010--Hb_075247_010 Hb_005306_010--Hb_002998_070 Hb_010050_050 Hb_010050_050 Hb_005306_010--Hb_010050_050 Hb_158092_010 Hb_158092_010 Hb_005306_010--Hb_158092_010 Hb_000211_030 Hb_000211_030 Hb_005306_010--Hb_000211_030 Hb_000926_100--Hb_000450_160 Hb_001623_090 Hb_001623_090 Hb_000926_100--Hb_001623_090 Hb_003972_060 Hb_003972_060 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_000926_100--Hb_002998_070 Hb_003680_210 Hb_003680_210 Hb_000926_100--Hb_003680_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218202 0.103096 0.809914 1.07937 0.42884 0.048901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.255017 0.400715 1.70784 1.07974 0

CAGE analysis