Hb_010050_050

Information

Type -
Description -
Location Contig10050: 49585-75249
Sequence    

Annotation

kegg
ID rcu:RCOM_1430250
description hypothetical protein
nr
ID XP_012089127.1
description PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
swissprot
ID F4IN58
description Piezo-type mechanosensitive ion channel homolog OS=Arabidopsis thaliana GN=At2g48040/At2g48050/At2g48060 PE=2 SV=1
trembl
ID B9RF08
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430250 PE=4 SV=1
Gene Ontology
ID GO:0016021
description piezo-type mechanosensitive ion channel homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00359: 53216-55912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010050_050 0.0 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
2 Hb_000975_360 0.1594323466 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000649_130 0.1594691442 - - Polcalcin Jun o, putative [Ricinus communis]
4 Hb_021888_050 0.1623105165 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_001856_200 0.163901657 - - Esterase PIR7B, putative [Ricinus communis]
6 Hb_008643_200 0.1647741588 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
7 Hb_003972_080 0.1649828663 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
8 Hb_010897_030 0.1692318078 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001123_210 0.1718292932 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
10 Hb_167776_030 0.1719666563 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
11 Hb_000948_080 0.1720094964 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
12 Hb_002577_010 0.1722563936 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
13 Hb_165669_010 0.1739296936 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
14 Hb_000914_090 0.1742321392 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
15 Hb_001049_020 0.1761138311 - - conserved hypothetical protein [Ricinus communis]
16 Hb_034688_020 0.1778225669 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
17 Hb_002341_020 0.1791014791 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
18 Hb_000392_310 0.1803558889 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008226_080 0.1812577534 - - Protein LRP16, putative [Ricinus communis]
20 Hb_005074_030 0.1817408393 - - -

Gene co-expression network

sample Hb_010050_050 Hb_010050_050 Hb_000975_360 Hb_000975_360 Hb_010050_050--Hb_000975_360 Hb_000649_130 Hb_000649_130 Hb_010050_050--Hb_000649_130 Hb_021888_050 Hb_021888_050 Hb_010050_050--Hb_021888_050 Hb_001856_200 Hb_001856_200 Hb_010050_050--Hb_001856_200 Hb_008643_200 Hb_008643_200 Hb_010050_050--Hb_008643_200 Hb_003972_080 Hb_003972_080 Hb_010050_050--Hb_003972_080 Hb_115241_010 Hb_115241_010 Hb_000975_360--Hb_115241_010 Hb_002042_130 Hb_002042_130 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_000975_360--Hb_021888_050 Hb_001189_140 Hb_001189_140 Hb_000975_360--Hb_001189_140 Hb_001894_050 Hb_001894_050 Hb_000975_360--Hb_001894_050 Hb_005074_030 Hb_005074_030 Hb_000649_130--Hb_005074_030 Hb_000210_010 Hb_000210_010 Hb_000649_130--Hb_000210_010 Hb_000178_130 Hb_000178_130 Hb_000649_130--Hb_000178_130 Hb_000327_380 Hb_000327_380 Hb_000649_130--Hb_000327_380 Hb_116608_010 Hb_116608_010 Hb_000649_130--Hb_116608_010 Hb_007943_050 Hb_007943_050 Hb_000649_130--Hb_007943_050 Hb_021888_050--Hb_115241_010 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_002217_020 Hb_002217_020 Hb_001856_200--Hb_002217_020 Hb_001825_060 Hb_001825_060 Hb_001856_200--Hb_001825_060 Hb_000987_060 Hb_000987_060 Hb_001856_200--Hb_000987_060 Hb_001856_200--Hb_000210_010 Hb_141990_040 Hb_141990_040 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450 Hb_187679_010 Hb_187679_010 Hb_008643_200--Hb_187679_010 Hb_001159_110 Hb_001159_110 Hb_008643_200--Hb_001159_110 Hb_000211_030 Hb_000211_030 Hb_008643_200--Hb_000211_030 Hb_008643_200--Hb_005074_030 Hb_009620_020 Hb_009620_020 Hb_008643_200--Hb_009620_020 Hb_000413_010 Hb_000413_010 Hb_008643_200--Hb_000413_010 Hb_003462_120 Hb_003462_120 Hb_003972_080--Hb_003462_120 Hb_001481_140 Hb_001481_140 Hb_003972_080--Hb_001481_140 Hb_003783_030 Hb_003783_030 Hb_003972_080--Hb_003783_030 Hb_000007_140 Hb_000007_140 Hb_003972_080--Hb_000007_140 Hb_005224_010 Hb_005224_010 Hb_003972_080--Hb_005224_010 Hb_036790_020 Hb_036790_020 Hb_003972_080--Hb_036790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.138755 0.251478 0.0625944 0.179565 0.0334877 0.0309469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238215 0.343717 0.301762 0.127049 0.00962511

CAGE analysis