Hb_007943_060

Information

Type -
Description -
Location Contig7943: 69800-71751
Sequence    

Annotation

kegg
ID rcu:RCOM_1052070
description rac gtpase, putative (EC:3.1.4.12)
nr
ID AGL44368.1
description Rop5 [Hevea brasiliensis]
swissprot
ID O82480
description Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1
trembl
ID T1RM48
description Rop5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein arac7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58460: 69804-72519 , PASA_asmbl_58461: 70934-71128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_060 0.0 - - Rop5 [Hevea brasiliensis]
2 Hb_001545_070 0.096891162 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001287_010 0.1856947794 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
4 Hb_009707_030 0.2057087606 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
5 Hb_032202_150 0.2163596048 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
6 Hb_000878_140 0.2179817995 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
7 Hb_000487_120 0.2228445728 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000189_170 0.229296103 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_001221_330 0.2331455937 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
10 Hb_105328_010 0.2333710752 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
11 Hb_003813_180 0.2371836393 - - sterol desaturase, putative [Ricinus communis]
12 Hb_022250_020 0.2384094323 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
13 Hb_004125_050 0.2402136459 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
14 Hb_007904_240 0.2418619344 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
15 Hb_000010_300 0.245857805 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
16 Hb_071130_050 0.2594196886 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
17 Hb_009571_010 0.2622075035 - - early-responsive to dehydration family protein [Populus trichocarpa]
18 Hb_083940_010 0.2639263613 - - Zeamatin precursor, putative [Ricinus communis]
19 Hb_001486_010 0.2641091626 - - adenylsulfate kinase, putative [Ricinus communis]
20 Hb_114310_100 0.2676426513 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007943_060 Hb_007943_060 Hb_001545_070 Hb_001545_070 Hb_007943_060--Hb_001545_070 Hb_001287_010 Hb_001287_010 Hb_007943_060--Hb_001287_010 Hb_009707_030 Hb_009707_030 Hb_007943_060--Hb_009707_030 Hb_032202_150 Hb_032202_150 Hb_007943_060--Hb_032202_150 Hb_000878_140 Hb_000878_140 Hb_007943_060--Hb_000878_140 Hb_000487_120 Hb_000487_120 Hb_007943_060--Hb_000487_120 Hb_000189_170 Hb_000189_170 Hb_001545_070--Hb_000189_170 Hb_022250_020 Hb_022250_020 Hb_001545_070--Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_001545_070--Hb_001221_330 Hb_001545_070--Hb_000487_120 Hb_001545_070--Hb_009707_030 Hb_001287_010--Hb_009707_030 Hb_002078_170 Hb_002078_170 Hb_001287_010--Hb_002078_170 Hb_001287_010--Hb_001545_070 Hb_002150_060 Hb_002150_060 Hb_001287_010--Hb_002150_060 Hb_000538_180 Hb_000538_180 Hb_001287_010--Hb_000538_180 Hb_117807_010 Hb_117807_010 Hb_009707_030--Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_009707_030--Hb_000170_120 Hb_000008_400 Hb_000008_400 Hb_009707_030--Hb_000008_400 Hb_032202_150--Hb_001545_070 Hb_032202_150--Hb_022250_020 Hb_002475_080 Hb_002475_080 Hb_032202_150--Hb_002475_080 Hb_032202_150--Hb_001287_010 Hb_032202_150--Hb_009707_030 Hb_000008_380 Hb_000008_380 Hb_000878_140--Hb_000008_380 Hb_000878_140--Hb_001545_070 Hb_007904_240 Hb_007904_240 Hb_000878_140--Hb_007904_240 Hb_014720_010 Hb_014720_010 Hb_000878_140--Hb_014720_010 Hb_000878_140--Hb_000487_120 Hb_000487_120--Hb_001221_330 Hb_005181_160 Hb_005181_160 Hb_000487_120--Hb_005181_160 Hb_000487_120--Hb_022250_020 Hb_002374_080 Hb_002374_080 Hb_000487_120--Hb_002374_080 Hb_001114_080 Hb_001114_080 Hb_000487_120--Hb_001114_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.677266 0.272364 9.39095 5.05523 0.249973 0.0251867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44166 1.44277 9.9933 2.43835 1.24394

CAGE analysis