Hb_002475_080

Information

Type transcription factor
Description TF Family: PHD
Location Contig2475: 79455-81799
Sequence    

Annotation

kegg
ID rcu:RCOM_0052530
description DNA binding protein, putative
nr
ID XP_012086460.1
description PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
swissprot
ID Q7X6Y7
description PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1
trembl
ID A0A067K0P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22542 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein male meiocyte death 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_080 0.0 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
2 Hb_000935_080 0.196555928 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_114310_100 0.2071522461 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
4 Hb_000317_270 0.2166896583 - - Uncharacterized protein TCM_001673 [Theobroma cacao]
5 Hb_002662_040 0.2251110605 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
6 Hb_008747_010 0.2412572798 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
7 Hb_000320_260 0.2421170436 - - unnamed protein product [Vitis vinifera]
8 Hb_032202_150 0.2438774554 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
9 Hb_006634_100 0.2448310231 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005622_020 0.2465148433 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
11 Hb_001890_020 0.249307449 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
12 Hb_000010_300 0.2518489912 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
13 Hb_004163_030 0.2579182219 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
14 Hb_006951_030 0.2587530496 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
15 Hb_000941_060 0.2595569555 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
16 Hb_006472_080 0.2601987227 - - -
17 Hb_002701_230 0.2666454982 - - PREDICTED: uncharacterized protein LOC105646833 [Jatropha curcas]
18 Hb_000526_010 0.2667086297 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
19 Hb_004567_110 0.2675251821 - - hypothetical protein POPTR_0002s24610g [Populus trichocarpa]
20 Hb_002986_140 0.2693722514 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]

Gene co-expression network

sample Hb_002475_080 Hb_002475_080 Hb_000935_080 Hb_000935_080 Hb_002475_080--Hb_000935_080 Hb_114310_100 Hb_114310_100 Hb_002475_080--Hb_114310_100 Hb_000317_270 Hb_000317_270 Hb_002475_080--Hb_000317_270 Hb_002662_040 Hb_002662_040 Hb_002475_080--Hb_002662_040 Hb_008747_010 Hb_008747_010 Hb_002475_080--Hb_008747_010 Hb_000320_260 Hb_000320_260 Hb_002475_080--Hb_000320_260 Hb_000088_240 Hb_000088_240 Hb_000935_080--Hb_000088_240 Hb_000941_060 Hb_000941_060 Hb_000935_080--Hb_000941_060 Hb_006951_030 Hb_006951_030 Hb_000935_080--Hb_006951_030 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_000189_170 Hb_000189_170 Hb_114310_100--Hb_000189_170 Hb_114310_100--Hb_000935_080 Hb_000406_030 Hb_000406_030 Hb_114310_100--Hb_000406_030 Hb_114310_100--Hb_000317_270 Hb_114310_100--Hb_000941_060 Hb_004052_100 Hb_004052_100 Hb_114310_100--Hb_004052_100 Hb_000317_270--Hb_004052_100 Hb_000317_270--Hb_000941_060 Hb_033312_080 Hb_033312_080 Hb_000317_270--Hb_033312_080 Hb_000317_270--Hb_000935_080 Hb_001195_050 Hb_001195_050 Hb_000317_270--Hb_001195_050 Hb_000526_010 Hb_000526_010 Hb_002662_040--Hb_000526_010 Hb_002662_040--Hb_004163_030 Hb_002662_040--Hb_006634_100 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_012423_060 Hb_012423_060 Hb_008747_010--Hb_012423_060 Hb_000186_030 Hb_000186_030 Hb_008747_010--Hb_000186_030 Hb_000753_110 Hb_000753_110 Hb_008747_010--Hb_000753_110 Hb_003299_020 Hb_003299_020 Hb_008747_010--Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_008747_010--Hb_005545_020 Hb_005622_020 Hb_005622_020 Hb_008747_010--Hb_005622_020 Hb_000010_300 Hb_000010_300 Hb_000320_260--Hb_000010_300 Hb_009541_010 Hb_009541_010 Hb_000320_260--Hb_009541_010 Hb_000320_260--Hb_002662_040 Hb_000320_260--Hb_000526_010 Hb_000320_260--Hb_004163_030 Hb_105328_010 Hb_105328_010 Hb_000320_260--Hb_105328_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0346853 0.315571 0.0908105 0 0.00914401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0170666 0.129578 0.0475132 0.0722107

CAGE analysis