Hb_009541_010

Information

Type -
Description -
Location Contig9541: 14812-18847
Sequence    

Annotation

kegg
ID rcu:RCOM_0804420
description hypothetical protein
nr
ID XP_012078612.1
description PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
swissprot
ID Q9LYE5
description Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana GN=CID5 PE=2 SV=1
trembl
ID A0A067K7T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13206 PE=4 SV=1
Gene Ontology
ID GO:0005515
description polyadenylate-binding protein-interacting protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63486: 15597-18761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009541_010 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
2 Hb_000414_140 0.1387324597 - - Chalcone synthase, putative [Ricinus communis]
3 Hb_002928_020 0.1545942767 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_000320_260 0.1882913391 - - unnamed protein product [Vitis vinifera]
5 Hb_027043_010 0.193110929 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
6 Hb_083493_010 0.2054185301 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_000466_070 0.2082210043 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
8 Hb_001817_120 0.2086150895 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
9 Hb_001437_140 0.213338535 - - -
10 Hb_000649_330 0.2180019304 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
11 Hb_052135_020 0.2185028076 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
12 Hb_099084_010 0.2200299183 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_000254_010 0.2206629346 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
14 Hb_002943_010 0.2206737461 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
15 Hb_001021_070 0.2242341857 - - unnamed protein product [Vitis vinifera]
16 Hb_002603_040 0.2247431205 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
17 Hb_000735_080 0.227838336 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
18 Hb_002000_090 0.2280264462 - - 60S ribosomal protein L3B [Hevea brasiliensis]
19 Hb_003470_050 0.2280488243 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_002909_080 0.230118024 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009541_010 Hb_009541_010 Hb_000414_140 Hb_000414_140 Hb_009541_010--Hb_000414_140 Hb_002928_020 Hb_002928_020 Hb_009541_010--Hb_002928_020 Hb_000320_260 Hb_000320_260 Hb_009541_010--Hb_000320_260 Hb_027043_010 Hb_027043_010 Hb_009541_010--Hb_027043_010 Hb_083493_010 Hb_083493_010 Hb_009541_010--Hb_083493_010 Hb_000466_070 Hb_000466_070 Hb_009541_010--Hb_000466_070 Hb_000414_140--Hb_000466_070 Hb_000414_140--Hb_002928_020 Hb_001817_120 Hb_001817_120 Hb_000414_140--Hb_001817_120 Hb_002909_080 Hb_002909_080 Hb_000414_140--Hb_002909_080 Hb_002943_010 Hb_002943_010 Hb_000414_140--Hb_002943_010 Hb_002928_020--Hb_000466_070 Hb_002928_020--Hb_001817_120 Hb_002928_020--Hb_002943_010 Hb_012760_090 Hb_012760_090 Hb_002928_020--Hb_012760_090 Hb_000254_010 Hb_000254_010 Hb_002928_020--Hb_000254_010 Hb_000010_300 Hb_000010_300 Hb_000320_260--Hb_000010_300 Hb_002662_040 Hb_002662_040 Hb_000320_260--Hb_002662_040 Hb_000526_010 Hb_000526_010 Hb_000320_260--Hb_000526_010 Hb_004163_030 Hb_004163_030 Hb_000320_260--Hb_004163_030 Hb_105328_010 Hb_105328_010 Hb_000320_260--Hb_105328_010 Hb_000477_070 Hb_000477_070 Hb_027043_010--Hb_000477_070 Hb_002849_050 Hb_002849_050 Hb_027043_010--Hb_002849_050 Hb_000649_330 Hb_000649_330 Hb_027043_010--Hb_000649_330 Hb_052135_020 Hb_052135_020 Hb_027043_010--Hb_052135_020 Hb_002259_220 Hb_002259_220 Hb_027043_010--Hb_002259_220 Hb_000015_150 Hb_000015_150 Hb_027043_010--Hb_000015_150 Hb_001688_070 Hb_001688_070 Hb_083493_010--Hb_001688_070 Hb_009745_010 Hb_009745_010 Hb_083493_010--Hb_009745_010 Hb_000203_070 Hb_000203_070 Hb_083493_010--Hb_000203_070 Hb_012308_050 Hb_012308_050 Hb_083493_010--Hb_012308_050 Hb_000363_180 Hb_000363_180 Hb_083493_010--Hb_000363_180 Hb_187021_010 Hb_187021_010 Hb_083493_010--Hb_187021_010 Hb_003582_090 Hb_003582_090 Hb_000466_070--Hb_003582_090 Hb_000445_370 Hb_000445_370 Hb_000466_070--Hb_000445_370 Hb_017098_040 Hb_017098_040 Hb_000466_070--Hb_017098_040 Hb_001195_660 Hb_001195_660 Hb_000466_070--Hb_001195_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.790175 12.665 18.9715 20.7777 2.10663 7.96985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042744 0.033622 10.0469 9.35502 10.0643

CAGE analysis