Hb_000466_070

Information

Type -
Description -
Location Contig466: 173107-176980
Sequence    

Annotation

kegg
ID tcc:TCM_001794
description Glucanase like protein
nr
ID KDP35551.1
description hypothetical protein JCGZ_08989 [Jatropha curcas]
swissprot
ID Q9M088
description Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1
trembl
ID A0A067KH36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08989 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44086: 175232-175731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000466_070 0.0 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
2 Hb_002928_020 0.130008177 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_003582_090 0.1365145225 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
4 Hb_000414_140 0.1585197868 - - Chalcone synthase, putative [Ricinus communis]
5 Hb_000445_370 0.1721239528 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
6 Hb_017098_040 0.1721267114 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_001195_660 0.1793628316 - - metalloendopeptidase, putative [Ricinus communis]
8 Hb_002943_010 0.1851709175 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
9 Hb_003847_040 0.1855701753 - - adenosine diphosphatase, putative [Ricinus communis]
10 Hb_002675_080 0.1881422338 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
11 Hb_000367_120 0.188788551 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
12 Hb_000638_060 0.1890847577 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
13 Hb_000635_050 0.1904732238 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
14 Hb_000429_160 0.1907846943 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
15 Hb_000283_140 0.1919083026 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
16 Hb_000120_530 0.196980525 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
17 Hb_000556_070 0.1971344946 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
18 Hb_029584_160 0.1992814934 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
19 Hb_001677_040 0.2010497679 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
20 Hb_048476_030 0.2012382006 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]

Gene co-expression network

sample Hb_000466_070 Hb_000466_070 Hb_002928_020 Hb_002928_020 Hb_000466_070--Hb_002928_020 Hb_003582_090 Hb_003582_090 Hb_000466_070--Hb_003582_090 Hb_000414_140 Hb_000414_140 Hb_000466_070--Hb_000414_140 Hb_000445_370 Hb_000445_370 Hb_000466_070--Hb_000445_370 Hb_017098_040 Hb_017098_040 Hb_000466_070--Hb_017098_040 Hb_001195_660 Hb_001195_660 Hb_000466_070--Hb_001195_660 Hb_009541_010 Hb_009541_010 Hb_002928_020--Hb_009541_010 Hb_001817_120 Hb_001817_120 Hb_002928_020--Hb_001817_120 Hb_002943_010 Hb_002943_010 Hb_002928_020--Hb_002943_010 Hb_012760_090 Hb_012760_090 Hb_002928_020--Hb_012760_090 Hb_000254_010 Hb_000254_010 Hb_002928_020--Hb_000254_010 Hb_003582_090--Hb_000445_370 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_003582_090--Hb_001195_660 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003847_040 Hb_003847_040 Hb_003582_090--Hb_003847_040 Hb_000414_140--Hb_009541_010 Hb_000414_140--Hb_002928_020 Hb_000414_140--Hb_001817_120 Hb_002909_080 Hb_002909_080 Hb_000414_140--Hb_002909_080 Hb_000414_140--Hb_002943_010 Hb_035834_010 Hb_035834_010 Hb_000445_370--Hb_035834_010 Hb_006916_030 Hb_006916_030 Hb_000445_370--Hb_006916_030 Hb_000066_040 Hb_000066_040 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010 Hb_004678_010 Hb_004678_010 Hb_017098_040--Hb_004678_010 Hb_017098_040--Hb_002675_080 Hb_000635_050 Hb_000635_050 Hb_017098_040--Hb_000635_050 Hb_000357_070 Hb_000357_070 Hb_017098_040--Hb_000357_070 Hb_000915_130 Hb_000915_130 Hb_017098_040--Hb_000915_130 Hb_000283_140 Hb_000283_140 Hb_017098_040--Hb_000283_140 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0730256 0.729389 1.2062 1.50437 0.309833 0.129295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.452101 0.356181 1.41921

CAGE analysis