Hb_000414_140

Information

Type -
Description -
Location Contig414: 259568-261299
Sequence    

Annotation

kegg
ID rcu:RCOM_0661520
description Chalcone synthase, putative (EC:2.3.1.74)
nr
ID XP_002529257.1
description Chalcone synthase, putative [Ricinus communis]
swissprot
ID Q8LDM2
description Type III polyketide synthase B OS=Arabidopsis thaliana GN=PKSB PE=1 SV=1
trembl
ID B9STD8
description Chalcone synthase, putative OS=Ricinus communis GN=RCOM_0661520 PE=3 SV=1
Gene Ontology
ID GO:0005783
description chalcone synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_140 0.0 - - Chalcone synthase, putative [Ricinus communis]
2 Hb_009541_010 0.1387324597 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
3 Hb_000466_070 0.1585197868 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
4 Hb_002928_020 0.1702724076 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_001817_120 0.1958960691 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
6 Hb_002909_080 0.2126791142 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_002943_010 0.21990183 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
8 Hb_006634_100 0.2274092714 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000227_340 0.2319760106 - - chloride channel clc, putative [Ricinus communis]
10 Hb_005235_040 0.2354855045 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
11 Hb_000878_110 0.237420316 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_029584_160 0.237677981 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
13 Hb_000094_080 0.2387797796 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
14 Hb_027043_010 0.2411446046 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
15 Hb_099084_010 0.2421836747 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000320_260 0.2433817522 - - unnamed protein product [Vitis vinifera]
17 Hb_004410_110 0.2508372497 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000120_530 0.2523458707 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
19 Hb_006911_020 0.2528260347 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
20 Hb_002783_190 0.253189015 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]

Gene co-expression network

sample Hb_000414_140 Hb_000414_140 Hb_009541_010 Hb_009541_010 Hb_000414_140--Hb_009541_010 Hb_000466_070 Hb_000466_070 Hb_000414_140--Hb_000466_070 Hb_002928_020 Hb_002928_020 Hb_000414_140--Hb_002928_020 Hb_001817_120 Hb_001817_120 Hb_000414_140--Hb_001817_120 Hb_002909_080 Hb_002909_080 Hb_000414_140--Hb_002909_080 Hb_002943_010 Hb_002943_010 Hb_000414_140--Hb_002943_010 Hb_009541_010--Hb_002928_020 Hb_000320_260 Hb_000320_260 Hb_009541_010--Hb_000320_260 Hb_027043_010 Hb_027043_010 Hb_009541_010--Hb_027043_010 Hb_083493_010 Hb_083493_010 Hb_009541_010--Hb_083493_010 Hb_009541_010--Hb_000466_070 Hb_000466_070--Hb_002928_020 Hb_003582_090 Hb_003582_090 Hb_000466_070--Hb_003582_090 Hb_000445_370 Hb_000445_370 Hb_000466_070--Hb_000445_370 Hb_017098_040 Hb_017098_040 Hb_000466_070--Hb_017098_040 Hb_001195_660 Hb_001195_660 Hb_000466_070--Hb_001195_660 Hb_002928_020--Hb_001817_120 Hb_002928_020--Hb_002943_010 Hb_012760_090 Hb_012760_090 Hb_002928_020--Hb_012760_090 Hb_000254_010 Hb_000254_010 Hb_002928_020--Hb_000254_010 Hb_002000_090 Hb_002000_090 Hb_001817_120--Hb_002000_090 Hb_001817_120--Hb_000254_010 Hb_073808_010 Hb_073808_010 Hb_001817_120--Hb_073808_010 Hb_001179_010 Hb_001179_010 Hb_001817_120--Hb_001179_010 Hb_007237_010 Hb_007237_010 Hb_001817_120--Hb_007237_010 Hb_000979_260 Hb_000979_260 Hb_002909_080--Hb_000979_260 Hb_029584_160 Hb_029584_160 Hb_002909_080--Hb_029584_160 Hb_008066_080 Hb_008066_080 Hb_002909_080--Hb_008066_080 Hb_112064_010 Hb_112064_010 Hb_002909_080--Hb_112064_010 Hb_008747_010 Hb_008747_010 Hb_002909_080--Hb_008747_010 Hb_001353_020 Hb_001353_020 Hb_002909_080--Hb_001353_020 Hb_000340_220 Hb_000340_220 Hb_002943_010--Hb_000340_220 Hb_000066_040 Hb_000066_040 Hb_002943_010--Hb_000066_040 Hb_002603_010 Hb_002603_010 Hb_002943_010--Hb_002603_010 Hb_013399_090 Hb_013399_090 Hb_002943_010--Hb_013399_090 Hb_000404_040 Hb_000404_040 Hb_002943_010--Hb_000404_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0727002 0.110568 0.103066 0.019469 0.0225791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0690484 0.0300365 0.0767657

CAGE analysis