Hb_029584_160

Information

Type -
Description -
Location Contig29584: 97546-101870
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15520g
description POPTRDRAFT_1080883; hypothetical protein
nr
ID XP_011014007.1
description PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
swissprot
ID Q5TKD8
description Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1
trembl
ID B9H8W5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s15520g PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30930: 97558-101739 , PASA_asmbl_30932: 99605-99791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_160 0.0 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
2 Hb_026698_020 0.1365389965 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_001179_010 0.1380085417 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
4 Hb_000035_060 0.1390335064 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
5 Hb_000635_050 0.1402416288 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
6 Hb_000096_110 0.1422188349 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
7 Hb_005999_020 0.1513044914 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
8 Hb_000556_070 0.1533355845 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
9 Hb_002909_080 0.1533995125 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
10 Hb_009449_100 0.1574493504 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
11 Hb_000165_100 0.1589757392 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
12 Hb_004574_040 0.1610314269 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
13 Hb_112064_010 0.1615605599 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
14 Hb_001195_230 0.1633883764 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
15 Hb_001514_240 0.1644356021 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
16 Hb_002571_080 0.165349062 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
17 Hb_002026_030 0.165373405 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_002838_010 0.1655344118 - - AGPase large subunit protein [Hevea brasiliensis]
19 Hb_000329_790 0.1669858418 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
20 Hb_001124_140 0.1679683858 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_029584_160 Hb_029584_160 Hb_026698_020 Hb_026698_020 Hb_029584_160--Hb_026698_020 Hb_001179_010 Hb_001179_010 Hb_029584_160--Hb_001179_010 Hb_000035_060 Hb_000035_060 Hb_029584_160--Hb_000035_060 Hb_000635_050 Hb_000635_050 Hb_029584_160--Hb_000635_050 Hb_000096_110 Hb_000096_110 Hb_029584_160--Hb_000096_110 Hb_005999_020 Hb_005999_020 Hb_029584_160--Hb_005999_020 Hb_001514_240 Hb_001514_240 Hb_026698_020--Hb_001514_240 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_009449_100 Hb_009449_100 Hb_026698_020--Hb_009449_100 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_001357_060 Hb_001357_060 Hb_001179_010--Hb_001357_060 Hb_000329_790 Hb_000329_790 Hb_001179_010--Hb_000329_790 Hb_000007_440 Hb_000007_440 Hb_001179_010--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_001179_010--Hb_007483_080 Hb_001179_010--Hb_000096_110 Hb_001179_010--Hb_026698_020 Hb_000556_070 Hb_000556_070 Hb_000035_060--Hb_000556_070 Hb_001141_060 Hb_001141_060 Hb_000035_060--Hb_001141_060 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_004976_080 Hb_004976_080 Hb_000035_060--Hb_004976_080 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_000357_070 Hb_000357_070 Hb_000635_050--Hb_000357_070 Hb_004678_010 Hb_004678_010 Hb_000635_050--Hb_004678_010 Hb_017098_040 Hb_017098_040 Hb_000635_050--Hb_017098_040 Hb_002026_030 Hb_002026_030 Hb_000635_050--Hb_002026_030 Hb_007765_130 Hb_007765_130 Hb_000635_050--Hb_007765_130 Hb_003055_070 Hb_003055_070 Hb_000635_050--Hb_003055_070 Hb_000096_110--Hb_001195_230 Hb_000320_450 Hb_000320_450 Hb_000096_110--Hb_000320_450 Hb_002838_010 Hb_002838_010 Hb_000096_110--Hb_002838_010 Hb_002316_020 Hb_002316_020 Hb_000096_110--Hb_002316_020 Hb_000096_110--Hb_000007_440 Hb_006478_050 Hb_006478_050 Hb_005999_020--Hb_006478_050 Hb_005999_020--Hb_007483_080 Hb_002871_110 Hb_002871_110 Hb_005999_020--Hb_002871_110 Hb_002571_080 Hb_002571_080 Hb_005999_020--Hb_002571_080 Hb_005486_020 Hb_005486_020 Hb_005999_020--Hb_005486_020 Hb_005999_020--Hb_000007_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43675 17.9406 23.1065 14.9699 0.242288 1.82098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.398511 0.313458 5.35666 8.00586 24.5465

CAGE analysis