Hb_005999_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5999: 4700-13990
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05340g
description POPTRDRAFT_1082531; hypothetical protein
nr
ID XP_012088310.1
description PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
swissprot
ID Q9C8N5
description Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1
trembl
ID A0A067LEL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24026 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein sensitive to proton rhizotoxicity 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50527: 11792-13446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005999_020 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
2 Hb_006478_050 0.1098937076 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
3 Hb_007483_080 0.1135424197 - - hypothetical protein RCOM_0634810 [Ricinus communis]
4 Hb_002871_110 0.1136273731 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
5 Hb_002571_080 0.1163425587 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
6 Hb_005486_020 0.1165114816 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
7 Hb_000007_440 0.1194326276 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_006970_170 0.1212009934 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_000500_230 0.1214947805 - - hypothetical protein RCOM_0634810 [Ricinus communis]
10 Hb_000694_050 0.1224759816 - - Nuclease PA3, putative [Ricinus communis]
11 Hb_000990_040 0.1262169898 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
12 Hb_044653_050 0.1275569644 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
13 Hb_000010_370 0.1296795293 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
14 Hb_000062_050 0.1306563961 - - protein binding protein, putative [Ricinus communis]
15 Hb_003849_030 0.1314673616 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
16 Hb_093364_010 0.1329319629 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
17 Hb_001352_030 0.1347814312 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
18 Hb_001179_010 0.1361088222 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
19 Hb_029095_010 0.1365477087 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
20 Hb_001266_130 0.1370060048 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005999_020 Hb_005999_020 Hb_006478_050 Hb_006478_050 Hb_005999_020--Hb_006478_050 Hb_007483_080 Hb_007483_080 Hb_005999_020--Hb_007483_080 Hb_002871_110 Hb_002871_110 Hb_005999_020--Hb_002871_110 Hb_002571_080 Hb_002571_080 Hb_005999_020--Hb_002571_080 Hb_005486_020 Hb_005486_020 Hb_005999_020--Hb_005486_020 Hb_000007_440 Hb_000007_440 Hb_005999_020--Hb_000007_440 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000922_160 Hb_000922_160 Hb_006478_050--Hb_000922_160 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_002890_160 Hb_002890_160 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_002010_100 Hb_002010_100 Hb_007483_080--Hb_002010_100 Hb_007483_080--Hb_000007_440 Hb_002361_010 Hb_002361_010 Hb_007483_080--Hb_002361_010 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_001158_120 Hb_001158_120 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_006970_170 Hb_006970_170 Hb_002871_110--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_002871_110--Hb_000010_370 Hb_002871_110--Hb_000500_230 Hb_000025_590 Hb_000025_590 Hb_002871_110--Hb_000025_590 Hb_000694_050 Hb_000694_050 Hb_002871_110--Hb_000694_050 Hb_007894_120 Hb_007894_120 Hb_002871_110--Hb_007894_120 Hb_002571_080--Hb_000694_050 Hb_010174_180 Hb_010174_180 Hb_002571_080--Hb_010174_180 Hb_002571_080--Hb_002871_110 Hb_001160_020 Hb_001160_020 Hb_002571_080--Hb_001160_020 Hb_002571_080--Hb_000007_440 Hb_000990_040 Hb_000990_040 Hb_005486_020--Hb_000990_040 Hb_029095_010 Hb_029095_010 Hb_005486_020--Hb_029095_010 Hb_005486_020--Hb_001352_030 Hb_002596_090 Hb_002596_090 Hb_005486_020--Hb_002596_090 Hb_093364_010 Hb_093364_010 Hb_005486_020--Hb_093364_010 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010 Hb_000007_440--Hb_002849_180 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_000007_440--Hb_001158_120 Hb_000007_440--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106823 6.37777 10.6087 4.72266 0.0654926 0.269748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0512481 0.262091 0.304847 2.79451 8.44846

CAGE analysis