Hb_002571_080

Information

Type -
Description -
Location Contig2571: 87329-91191
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06250g
description POPTRDRAFT_823722; glycosyltransferase family 14 family protein
nr
ID AAX33323.1
description secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
swissprot
ID Q9EPI1
description Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1
trembl
ID Q5BM97
description Secondary cell wall-related glycosyltransferase family 14 OS=Populus tremula x Populus tremuloides PE=2 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26760: 88184-90901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_080 0.0 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
2 Hb_005999_020 0.1163425587 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
3 Hb_000694_050 0.1197388167 - - Nuclease PA3, putative [Ricinus communis]
4 Hb_010174_180 0.1201129263 - - protein binding protein, putative [Ricinus communis]
5 Hb_002871_110 0.1266696106 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
6 Hb_001160_020 0.1309297488 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
7 Hb_000007_440 0.1332765308 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_000046_430 0.1355746704 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
9 Hb_003849_030 0.1376049296 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
10 Hb_001179_010 0.1381417484 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
11 Hb_007747_100 0.1382323809 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
12 Hb_006970_170 0.1388031924 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_002316_020 0.1403091511 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
14 Hb_005488_030 0.1404479052 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
15 Hb_007483_080 0.1411967785 - - hypothetical protein RCOM_0634810 [Ricinus communis]
16 Hb_001722_070 0.1413310714 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
17 Hb_001956_080 0.1417658423 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
18 Hb_005568_050 0.1488166348 - - ascorbate peroxidase [Hevea brasiliensis]
19 Hb_003607_140 0.1496899282 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
20 Hb_004525_020 0.1497788938 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_002571_080 Hb_002571_080 Hb_005999_020 Hb_005999_020 Hb_002571_080--Hb_005999_020 Hb_000694_050 Hb_000694_050 Hb_002571_080--Hb_000694_050 Hb_010174_180 Hb_010174_180 Hb_002571_080--Hb_010174_180 Hb_002871_110 Hb_002871_110 Hb_002571_080--Hb_002871_110 Hb_001160_020 Hb_001160_020 Hb_002571_080--Hb_001160_020 Hb_000007_440 Hb_000007_440 Hb_002571_080--Hb_000007_440 Hb_006478_050 Hb_006478_050 Hb_005999_020--Hb_006478_050 Hb_007483_080 Hb_007483_080 Hb_005999_020--Hb_007483_080 Hb_005999_020--Hb_002871_110 Hb_005486_020 Hb_005486_020 Hb_005999_020--Hb_005486_020 Hb_005999_020--Hb_000007_440 Hb_001579_060 Hb_001579_060 Hb_000694_050--Hb_001579_060 Hb_001883_010 Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_000987_020 Hb_000987_020 Hb_000694_050--Hb_000987_020 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000694_050--Hb_002078_320 Hb_002316_020 Hb_002316_020 Hb_010174_180--Hb_002316_020 Hb_003607_140 Hb_003607_140 Hb_010174_180--Hb_003607_140 Hb_031385_010 Hb_031385_010 Hb_010174_180--Hb_031385_010 Hb_002635_020 Hb_002635_020 Hb_010174_180--Hb_002635_020 Hb_001675_270 Hb_001675_270 Hb_010174_180--Hb_001675_270 Hb_000731_210 Hb_000731_210 Hb_010174_180--Hb_000731_210 Hb_006970_170 Hb_006970_170 Hb_002871_110--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_002871_110--Hb_000010_370 Hb_000500_230 Hb_000500_230 Hb_002871_110--Hb_000500_230 Hb_000025_590 Hb_000025_590 Hb_002871_110--Hb_000025_590 Hb_007894_120 Hb_007894_120 Hb_002871_110--Hb_007894_120 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_002849_120 Hb_002849_120 Hb_001160_020--Hb_002849_120 Hb_001153_090 Hb_001153_090 Hb_001160_020--Hb_001153_090 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_000007_440--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_000007_440--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.688061 1.02448 0.603095 0 0.0507177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0345655 0.064073 0.582309 0.92636

CAGE analysis