Hb_002000_090

Information

Type -
Description -
Location Contig2000: 42613-45129
Sequence    

Annotation

kegg
ID rcu:RCOM_0959710
description 60S ribosomal protein L3, putative
nr
ID ADR71240.1
description 60S ribosomal protein L3B [Hevea brasiliensis]
swissprot
ID P35684
description 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2
trembl
ID I3NMK3
description 60S ribosomal protein L3B OS=Hevea brasiliensis GN=RPL3B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_090 0.0 - - 60S ribosomal protein L3B [Hevea brasiliensis]
2 Hb_002284_080 0.1226582072 - - protein with unknown function [Ricinus communis]
3 Hb_001353_020 0.1485769898 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012760_090 0.1487854648 - - Aspartic proteinase-like protein 1 [Morus notabilis]
5 Hb_002119_040 0.1511498766 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_034507_090 0.1548572454 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_000735_140 0.1561681797 - - 3-glucanase family protein [Populus trichocarpa]
8 Hb_016564_060 0.1572024398 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
9 Hb_005054_020 0.1589684061 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
10 Hb_001491_040 0.1594728731 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_003710_020 0.160833894 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
12 Hb_000928_120 0.161969058 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
13 Hb_005333_080 0.1633294169 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001817_120 0.1664490052 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
15 Hb_001493_140 0.1675210779 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
16 Hb_001433_160 0.1675408503 - - phosphatase 2C family protein [Populus trichocarpa]
17 Hb_014720_050 0.1690946062 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
18 Hb_004522_030 0.1692856522 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
19 Hb_080477_080 0.1696636889 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
20 Hb_000000_480 0.1700670993 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002000_090 Hb_002000_090 Hb_002284_080 Hb_002284_080 Hb_002000_090--Hb_002284_080 Hb_001353_020 Hb_001353_020 Hb_002000_090--Hb_001353_020 Hb_012760_090 Hb_012760_090 Hb_002000_090--Hb_012760_090 Hb_002119_040 Hb_002119_040 Hb_002000_090--Hb_002119_040 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140 Hb_001433_160 Hb_001433_160 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_002284_080--Hb_001353_020 Hb_000096_110 Hb_000096_110 Hb_001353_020--Hb_000096_110 Hb_003929_230 Hb_003929_230 Hb_001353_020--Hb_003929_230 Hb_007894_070 Hb_007894_070 Hb_001353_020--Hb_007894_070 Hb_008066_080 Hb_008066_080 Hb_001353_020--Hb_008066_080 Hb_006414_010 Hb_006414_010 Hb_001353_020--Hb_006414_010 Hb_002641_160 Hb_002641_160 Hb_012760_090--Hb_002641_160 Hb_010050_020 Hb_010050_020 Hb_012760_090--Hb_010050_020 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_001491_040 Hb_001491_040 Hb_002119_040--Hb_001491_040 Hb_003647_040 Hb_003647_040 Hb_002119_040--Hb_003647_040 Hb_012727_010 Hb_012727_010 Hb_002119_040--Hb_012727_010 Hb_002324_040 Hb_002324_040 Hb_002119_040--Hb_002324_040 Hb_000002_360 Hb_000002_360 Hb_002119_040--Hb_000002_360 Hb_000563_630 Hb_000563_630 Hb_034507_090--Hb_000563_630 Hb_001493_140 Hb_001493_140 Hb_034507_090--Hb_001493_140 Hb_000742_130 Hb_000742_130 Hb_034507_090--Hb_000742_130 Hb_016564_060 Hb_016564_060 Hb_034507_090--Hb_016564_060 Hb_000210_160 Hb_000210_160 Hb_034507_090--Hb_000210_160 Hb_000645_160 Hb_000645_160 Hb_034507_090--Hb_000645_160 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_003849_190 Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_143766_030 Hb_143766_030 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000056_080 Hb_000056_080 Hb_000735_140--Hb_000056_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217142 4.65249 4.45659 9.06937 0.331229 0.220541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171117 0.269233 1.61352 2.89417 2.41356

CAGE analysis