Hb_000317_270

Information

Type -
Description -
Location Contig317: 202205-202657
Sequence    

Annotation

kegg
ID tcc:TCM_001673
description hypothetical protein
nr
ID XP_007048642.1
description Uncharacterized protein TCM_001673 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DJF1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_001673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_270 0.0 - - Uncharacterized protein TCM_001673 [Theobroma cacao]
2 Hb_114310_100 0.1719240368 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
3 Hb_004052_100 0.179663649 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
4 Hb_000941_060 0.1820763961 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
5 Hb_033312_080 0.1911832199 - - aldose-1-epimerase, putative [Ricinus communis]
6 Hb_000935_080 0.1918398944 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001195_050 0.1980761248 - - PREDICTED: adenosine kinase [Jatropha curcas]
8 Hb_011174_040 0.2082488656 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001329_070 0.2082725752 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
10 Hb_000406_030 0.212227471 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
11 Hb_002475_080 0.2166896583 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
12 Hb_054865_010 0.2197337138 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
13 Hb_006951_030 0.2217113413 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
14 Hb_000500_340 0.2237127132 - - PREDICTED: exonuclease 1 [Jatropha curcas]
15 Hb_006153_150 0.2305353286 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
16 Hb_003398_040 0.2313996021 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
17 Hb_001587_040 0.2338012505 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
18 Hb_000116_020 0.2356239545 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
19 Hb_002027_440 0.2363923892 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005237_020 0.2384711717 - - Kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_270 Hb_000317_270 Hb_114310_100 Hb_114310_100 Hb_000317_270--Hb_114310_100 Hb_004052_100 Hb_004052_100 Hb_000317_270--Hb_004052_100 Hb_000941_060 Hb_000941_060 Hb_000317_270--Hb_000941_060 Hb_033312_080 Hb_033312_080 Hb_000317_270--Hb_033312_080 Hb_000935_080 Hb_000935_080 Hb_000317_270--Hb_000935_080 Hb_001195_050 Hb_001195_050 Hb_000317_270--Hb_001195_050 Hb_000189_170 Hb_000189_170 Hb_114310_100--Hb_000189_170 Hb_114310_100--Hb_000935_080 Hb_000406_030 Hb_000406_030 Hb_114310_100--Hb_000406_030 Hb_114310_100--Hb_000941_060 Hb_114310_100--Hb_004052_100 Hb_001408_170 Hb_001408_170 Hb_004052_100--Hb_001408_170 Hb_011174_040 Hb_011174_040 Hb_004052_100--Hb_011174_040 Hb_001329_070 Hb_001329_070 Hb_004052_100--Hb_001329_070 Hb_003299_020 Hb_003299_020 Hb_004052_100--Hb_003299_020 Hb_003398_040 Hb_003398_040 Hb_004052_100--Hb_003398_040 Hb_001377_530 Hb_001377_530 Hb_004052_100--Hb_001377_530 Hb_000941_060--Hb_000935_080 Hb_000941_060--Hb_003398_040 Hb_000088_240 Hb_000088_240 Hb_000941_060--Hb_000088_240 Hb_002942_120 Hb_002942_120 Hb_000941_060--Hb_002942_120 Hb_000009_420 Hb_000009_420 Hb_000941_060--Hb_000009_420 Hb_021346_050 Hb_021346_050 Hb_000941_060--Hb_021346_050 Hb_002284_220 Hb_002284_220 Hb_033312_080--Hb_002284_220 Hb_005545_020 Hb_005545_020 Hb_033312_080--Hb_005545_020 Hb_002486_020 Hb_002486_020 Hb_033312_080--Hb_002486_020 Hb_033312_080--Hb_003299_020 Hb_033312_080--Hb_000406_030 Hb_007621_010 Hb_007621_010 Hb_033312_080--Hb_007621_010 Hb_000935_080--Hb_000088_240 Hb_006951_030 Hb_006951_030 Hb_000935_080--Hb_006951_030 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_000500_350 Hb_000500_350 Hb_001195_050--Hb_000500_350 Hb_000500_340 Hb_000500_340 Hb_001195_050--Hb_000500_340 Hb_005504_040 Hb_005504_040 Hb_001195_050--Hb_005504_040 Hb_000155_150 Hb_000155_150 Hb_001195_050--Hb_000155_150 Hb_004650_030 Hb_004650_030 Hb_001195_050--Hb_004650_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0583108 1.13517 0.487205 0 0.0608514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.249243 0.206475 0.314191 0.454836

CAGE analysis