Hb_000941_060

Information

Type transcription factor
Description TF Family: HB
Location Contig941: 79799-81682
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05890g
description POPTRDRAFT_1103306; hypothetical protein
nr
ID XP_002322729.2
description hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
swissprot
ID P46665
description Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3
trembl
ID B9IIA1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05890g PE=4 SV=2
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hox11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63167: 79898-81472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_060 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
2 Hb_000935_080 0.128296198 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003398_040 0.1287263583 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_000088_240 0.1529310201 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_002942_120 0.1546205741 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
6 Hb_000009_420 0.1569836363 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
7 Hb_021346_050 0.1583498109 - - xylulose kinase, putative [Ricinus communis]
8 Hb_000120_300 0.1624848963 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
9 Hb_004102_080 0.1634591242 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
10 Hb_004052_100 0.1642054522 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
11 Hb_011174_040 0.1667233037 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005527_060 0.1677353858 - - malic enzyme, putative [Ricinus communis]
13 Hb_003299_020 0.1688525074 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
14 Hb_007943_180 0.1710950384 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
15 Hb_000907_140 0.171376261 - - PREDICTED: annexin D5-like [Jatropha curcas]
16 Hb_000310_060 0.1743690886 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
17 Hb_000152_770 0.1760103334 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
18 Hb_114310_100 0.1767649375 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
19 Hb_000406_030 0.1769191586 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
20 Hb_001123_310 0.1770922711 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_000941_060 Hb_000941_060 Hb_000935_080 Hb_000935_080 Hb_000941_060--Hb_000935_080 Hb_003398_040 Hb_003398_040 Hb_000941_060--Hb_003398_040 Hb_000088_240 Hb_000088_240 Hb_000941_060--Hb_000088_240 Hb_002942_120 Hb_002942_120 Hb_000941_060--Hb_002942_120 Hb_000009_420 Hb_000009_420 Hb_000941_060--Hb_000009_420 Hb_021346_050 Hb_021346_050 Hb_000941_060--Hb_021346_050 Hb_000935_080--Hb_000088_240 Hb_006951_030 Hb_006951_030 Hb_000935_080--Hb_006951_030 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_000310_060 Hb_000310_060 Hb_003398_040--Hb_000310_060 Hb_003398_040--Hb_000009_420 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_000120_300 Hb_000120_300 Hb_000088_240--Hb_000120_300 Hb_001123_310 Hb_001123_310 Hb_000088_240--Hb_001123_310 Hb_001377_530 Hb_001377_530 Hb_000088_240--Hb_001377_530 Hb_001117_080 Hb_001117_080 Hb_000088_240--Hb_001117_080 Hb_000088_240--Hb_005527_060 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_002942_120--Hb_005527_060 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_000009_420--Hb_000753_110 Hb_000416_190 Hb_000416_190 Hb_000009_420--Hb_000416_190 Hb_000009_420--Hb_000310_060 Hb_000009_420--Hb_010868_040 Hb_003299_020 Hb_003299_020 Hb_000009_420--Hb_003299_020 Hb_021346_050--Hb_000120_300 Hb_000032_610 Hb_000032_610 Hb_021346_050--Hb_000032_610 Hb_021346_050--Hb_007943_180 Hb_021346_050--Hb_010868_040 Hb_004102_080 Hb_004102_080 Hb_021346_050--Hb_004102_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02244 9.97701 3.29431 0.269774 0.12692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329753 0.933908 0.729735 2.8806 3.30387

CAGE analysis