Hb_033312_080

Information

Type -
Description -
Location Contig33312: 88456-89670
Sequence    

Annotation

kegg
ID rcu:RCOM_0012620
description aldose-1-epimerase, putative (EC:5.1.3.3)
nr
ID XP_002531177.1
description aldose-1-epimerase, putative [Ricinus communis]
swissprot
ID Q9GKX6
description Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1
trembl
ID B9SYV8
description Aldose 1-epimerase OS=Ricinus communis GN=RCOM_0012620 PE=3 SV=1
Gene Ontology
ID GO:0003824
description aldose 1-epimerase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34964: 88919-89776 , PASA_asmbl_34965: 89180-89555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_080 0.0 - - aldose-1-epimerase, putative [Ricinus communis]
2 Hb_002284_220 0.1565796945 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
3 Hb_005545_020 0.1628770673 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
4 Hb_002486_020 0.1636371982 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003299_020 0.1728018336 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
6 Hb_000406_030 0.1751841038 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
7 Hb_007621_010 0.1787864465 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
8 Hb_114310_100 0.1895682766 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
9 Hb_006978_020 0.1902372166 - - PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_004052_100 0.1904063533 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
11 Hb_000317_270 0.1911832199 - - Uncharacterized protein TCM_001673 [Theobroma cacao]
12 Hb_000310_120 0.1927354496 - - PREDICTED: probable transaldolase [Jatropha curcas]
13 Hb_000108_240 0.1932165245 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
14 Hb_001437_280 0.1932669479 - - AMP dependent CoA ligase, putative [Ricinus communis]
15 Hb_000622_060 0.1941623324 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
16 Hb_000941_060 0.1949839082 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
17 Hb_002248_010 0.1957197965 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
18 Hb_011174_040 0.1959758423 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005470_030 0.1961699855 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_000042_380 0.197770605 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]

Gene co-expression network

sample Hb_033312_080 Hb_033312_080 Hb_002284_220 Hb_002284_220 Hb_033312_080--Hb_002284_220 Hb_005545_020 Hb_005545_020 Hb_033312_080--Hb_005545_020 Hb_002486_020 Hb_002486_020 Hb_033312_080--Hb_002486_020 Hb_003299_020 Hb_003299_020 Hb_033312_080--Hb_003299_020 Hb_000406_030 Hb_000406_030 Hb_033312_080--Hb_000406_030 Hb_007621_010 Hb_007621_010 Hb_033312_080--Hb_007621_010 Hb_005470_030 Hb_005470_030 Hb_002284_220--Hb_005470_030 Hb_002284_220--Hb_002486_020 Hb_000110_060 Hb_000110_060 Hb_002284_220--Hb_000110_060 Hb_000108_240 Hb_000108_240 Hb_002284_220--Hb_000108_240 Hb_010172_110 Hb_010172_110 Hb_002284_220--Hb_010172_110 Hb_005545_020--Hb_003299_020 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_000753_110 Hb_000753_110 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030 Hb_002486_020--Hb_000110_060 Hb_002759_070 Hb_002759_070 Hb_002486_020--Hb_002759_070 Hb_003226_200 Hb_003226_200 Hb_002486_020--Hb_003226_200 Hb_000768_150 Hb_000768_150 Hb_002486_020--Hb_000768_150 Hb_002486_020--Hb_005470_030 Hb_003299_020--Hb_000753_110 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_003299_020--Hb_003398_040 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_001232_090 Hb_001232_090 Hb_000406_030--Hb_001232_090 Hb_013405_070 Hb_013405_070 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570 Hb_001437_280 Hb_001437_280 Hb_007621_010--Hb_001437_280 Hb_001863_180 Hb_001863_180 Hb_007621_010--Hb_001863_180 Hb_000042_090 Hb_000042_090 Hb_007621_010--Hb_000042_090 Hb_003659_010 Hb_003659_010 Hb_007621_010--Hb_003659_010 Hb_005455_010 Hb_005455_010 Hb_007621_010--Hb_005455_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0721474 0.861101 0.550623 0 0.0315125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0820469 0.128998 0.229912 0.577604 0.637026

CAGE analysis