Hb_001545_070

Information

Type -
Description -
Location Contig1545: 98190-100903
Sequence    

Annotation

kegg
ID rcu:RCOM_0297050
description hypothetical protein
nr
ID XP_002527108.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q98TX3
description Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1
trembl
ID B9SM89
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0297050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007943_060 0.096891162 - - Rop5 [Hevea brasiliensis]
3 Hb_000189_170 0.1758600265 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_022250_020 0.1786442497 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
5 Hb_001221_330 0.181825941 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
6 Hb_000487_120 0.1921578813 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009707_030 0.1955774713 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
8 Hb_032202_150 0.2101347303 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
9 Hb_009111_020 0.213320229 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
10 Hb_083940_010 0.2159667841 - - Zeamatin precursor, putative [Ricinus communis]
11 Hb_000878_140 0.2161839112 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
12 Hb_001287_010 0.2183432733 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
13 Hb_105328_010 0.2224215609 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
14 Hb_004125_050 0.2243363719 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
15 Hb_071130_050 0.2285862314 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
16 Hb_114310_100 0.229287487 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
17 Hb_003813_180 0.233174631 - - sterol desaturase, putative [Ricinus communis]
18 Hb_001486_010 0.2341291523 - - adenylsulfate kinase, putative [Ricinus communis]
19 Hb_003549_080 0.2349064894 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
20 Hb_002205_140 0.235232999 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]

Gene co-expression network

sample Hb_001545_070 Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_001545_070--Hb_007943_060 Hb_000189_170 Hb_000189_170 Hb_001545_070--Hb_000189_170 Hb_022250_020 Hb_022250_020 Hb_001545_070--Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_001545_070--Hb_001221_330 Hb_000487_120 Hb_000487_120 Hb_001545_070--Hb_000487_120 Hb_009707_030 Hb_009707_030 Hb_001545_070--Hb_009707_030 Hb_001287_010 Hb_001287_010 Hb_007943_060--Hb_001287_010 Hb_007943_060--Hb_009707_030 Hb_032202_150 Hb_032202_150 Hb_007943_060--Hb_032202_150 Hb_000878_140 Hb_000878_140 Hb_007943_060--Hb_000878_140 Hb_007943_060--Hb_000487_120 Hb_010172_110 Hb_010172_110 Hb_000189_170--Hb_010172_110 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_000189_170--Hb_001221_330 Hb_022250_020--Hb_001221_330 Hb_022250_020--Hb_083940_010 Hb_022250_020--Hb_000189_170 Hb_006153_040 Hb_006153_040 Hb_022250_020--Hb_006153_040 Hb_022250_020--Hb_000487_120 Hb_005181_160 Hb_005181_160 Hb_001221_330--Hb_005181_160 Hb_001221_330--Hb_083940_010 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110 Hb_000487_120--Hb_001221_330 Hb_000487_120--Hb_005181_160 Hb_002374_080 Hb_002374_080 Hb_000487_120--Hb_002374_080 Hb_001114_080 Hb_001114_080 Hb_000487_120--Hb_001114_080 Hb_009707_030--Hb_001287_010 Hb_117807_010 Hb_117807_010 Hb_009707_030--Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_009707_030--Hb_000170_120 Hb_000008_400 Hb_000008_400 Hb_009707_030--Hb_000008_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0361177 0.0178985 0.315558 0.16867 0.00845223 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0615281 0.0806893 0.276034 0.0833992 0.068376

CAGE analysis