Hb_032202_150

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig32202: 96387-98100
Sequence    

Annotation

kegg
ID rcu:RCOM_1613700
description sensor histidine kinase, putative
nr
ID XP_012083492.1
description PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
swissprot
ID Q9ZWJ9
description Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
trembl
ID A0A067JXK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14467 PE=4 SV=1
Gene Ontology
ID GO:0005488
description two-component response regulator arr14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34087: 92358-95520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_150 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
2 Hb_001545_070 0.2101347303 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007943_060 0.2163596048 - - Rop5 [Hevea brasiliensis]
4 Hb_022250_020 0.2382289659 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
5 Hb_002475_080 0.2438774554 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
6 Hb_001287_010 0.254303294 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
7 Hb_009707_030 0.2562245532 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
8 Hb_114310_100 0.2657745028 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
9 Hb_105328_010 0.2712251425 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
10 Hb_011671_190 0.2757894875 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
11 Hb_092703_010 0.2782772979 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
12 Hb_089889_010 0.2824128695 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
13 Hb_003813_180 0.2899101524 - - sterol desaturase, putative [Ricinus communis]
14 Hb_083940_010 0.292524487 - - Zeamatin precursor, putative [Ricinus communis]
15 Hb_001221_330 0.2932619321 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
16 Hb_001890_020 0.2984296509 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
17 Hb_002205_140 0.2987448406 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
18 Hb_006472_080 0.2997538366 - - -
19 Hb_000011_410 0.299889746 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007904_240 0.2999387613 - - PREDICTED: protein terminal ear1 [Jatropha curcas]

Gene co-expression network

sample Hb_032202_150 Hb_032202_150 Hb_001545_070 Hb_001545_070 Hb_032202_150--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_032202_150--Hb_007943_060 Hb_022250_020 Hb_022250_020 Hb_032202_150--Hb_022250_020 Hb_002475_080 Hb_002475_080 Hb_032202_150--Hb_002475_080 Hb_001287_010 Hb_001287_010 Hb_032202_150--Hb_001287_010 Hb_009707_030 Hb_009707_030 Hb_032202_150--Hb_009707_030 Hb_001545_070--Hb_007943_060 Hb_000189_170 Hb_000189_170 Hb_001545_070--Hb_000189_170 Hb_001545_070--Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_001545_070--Hb_001221_330 Hb_000487_120 Hb_000487_120 Hb_001545_070--Hb_000487_120 Hb_001545_070--Hb_009707_030 Hb_007943_060--Hb_001287_010 Hb_007943_060--Hb_009707_030 Hb_000878_140 Hb_000878_140 Hb_007943_060--Hb_000878_140 Hb_007943_060--Hb_000487_120 Hb_022250_020--Hb_001221_330 Hb_083940_010 Hb_083940_010 Hb_022250_020--Hb_083940_010 Hb_022250_020--Hb_000189_170 Hb_006153_040 Hb_006153_040 Hb_022250_020--Hb_006153_040 Hb_022250_020--Hb_000487_120 Hb_000935_080 Hb_000935_080 Hb_002475_080--Hb_000935_080 Hb_114310_100 Hb_114310_100 Hb_002475_080--Hb_114310_100 Hb_000317_270 Hb_000317_270 Hb_002475_080--Hb_000317_270 Hb_002662_040 Hb_002662_040 Hb_002475_080--Hb_002662_040 Hb_008747_010 Hb_008747_010 Hb_002475_080--Hb_008747_010 Hb_000320_260 Hb_000320_260 Hb_002475_080--Hb_000320_260 Hb_001287_010--Hb_009707_030 Hb_002078_170 Hb_002078_170 Hb_001287_010--Hb_002078_170 Hb_001287_010--Hb_001545_070 Hb_002150_060 Hb_002150_060 Hb_001287_010--Hb_002150_060 Hb_000538_180 Hb_000538_180 Hb_001287_010--Hb_000538_180 Hb_117807_010 Hb_117807_010 Hb_009707_030--Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_009707_030--Hb_000170_120 Hb_000008_400 Hb_000008_400 Hb_009707_030--Hb_000008_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0159258 0.013208 0.267117 0.0595873 0.0149181 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0571623 0.21363 0.0457229 0.0594402

CAGE analysis