Hb_000170_120

Information

Type -
Description -
Location Contig170: 141055-145137
Sequence    

Annotation

kegg
ID rcu:RCOM_0561590
description ATP binding protein, putative (EC:2.7.11.19)
nr
ID XP_002520305.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9S2T6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0561590 PE=3 SV=1
Gene Ontology
ID GO:0004689
description probable receptor-like serine threonine-protein kinase at5g57670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15874: 140971-145000 , PASA_asmbl_15875: 141655-141948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_120 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_117807_010 0.1433163811 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
3 Hb_012163_020 0.1541535045 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
4 Hb_003097_060 0.1953053971 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
5 Hb_002609_040 0.2089330159 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
6 Hb_005656_190 0.2098004308 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
7 Hb_000389_050 0.2183380918 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
8 Hb_023344_050 0.2215988217 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
9 Hb_002936_080 0.2230934414 - - Protein bem46, putative [Ricinus communis]
10 Hb_002026_120 0.2232032383 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
11 Hb_007943_190 0.225547402 - - cytoplasmic dynein light chain, putative [Ricinus communis]
12 Hb_009707_030 0.2281108796 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
13 Hb_000340_310 0.2304434823 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
14 Hb_025645_030 0.2333173546 - - -
15 Hb_000008_400 0.2348275287 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
16 Hb_000815_290 0.235663325 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
17 Hb_000178_120 0.2388681957 - - PREDICTED: histone H2B [Jatropha curcas]
18 Hb_000292_060 0.2427292715 - - transporter, putative [Ricinus communis]
19 Hb_000436_030 0.2444694806 - - conserved hypothetical protein [Ricinus communis]
20 Hb_016564_010 0.2444898083 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]

Gene co-expression network

sample Hb_000170_120 Hb_000170_120 Hb_117807_010 Hb_117807_010 Hb_000170_120--Hb_117807_010 Hb_012163_020 Hb_012163_020 Hb_000170_120--Hb_012163_020 Hb_003097_060 Hb_003097_060 Hb_000170_120--Hb_003097_060 Hb_002609_040 Hb_002609_040 Hb_000170_120--Hb_002609_040 Hb_005656_190 Hb_005656_190 Hb_000170_120--Hb_005656_190 Hb_000389_050 Hb_000389_050 Hb_000170_120--Hb_000389_050 Hb_117807_010--Hb_012163_020 Hb_000140_360 Hb_000140_360 Hb_117807_010--Hb_000140_360 Hb_000815_290 Hb_000815_290 Hb_117807_010--Hb_000815_290 Hb_000340_310 Hb_000340_310 Hb_117807_010--Hb_000340_310 Hb_002026_120 Hb_002026_120 Hb_117807_010--Hb_002026_120 Hb_012163_020--Hb_003097_060 Hb_001377_420 Hb_001377_420 Hb_012163_020--Hb_001377_420 Hb_007943_190 Hb_007943_190 Hb_012163_020--Hb_007943_190 Hb_012163_020--Hb_000340_310 Hb_011671_460 Hb_011671_460 Hb_003097_060--Hb_011671_460 Hb_000096_150 Hb_000096_150 Hb_003097_060--Hb_000096_150 Hb_000056_250 Hb_000056_250 Hb_003097_060--Hb_000056_250 Hb_027751_060 Hb_027751_060 Hb_003097_060--Hb_027751_060 Hb_003097_060--Hb_007943_190 Hb_001097_090 Hb_001097_090 Hb_002609_040--Hb_001097_090 Hb_000436_030 Hb_000436_030 Hb_002609_040--Hb_000436_030 Hb_019113_020 Hb_019113_020 Hb_002609_040--Hb_019113_020 Hb_000320_330 Hb_000320_330 Hb_002609_040--Hb_000320_330 Hb_010402_050 Hb_010402_050 Hb_002609_040--Hb_010402_050 Hb_011021_040 Hb_011021_040 Hb_002609_040--Hb_011021_040 Hb_000200_200 Hb_000200_200 Hb_005656_190--Hb_000200_200 Hb_000340_500 Hb_000340_500 Hb_005656_190--Hb_000340_500 Hb_001141_110 Hb_001141_110 Hb_005656_190--Hb_001141_110 Hb_000167_030 Hb_000167_030 Hb_005656_190--Hb_000167_030 Hb_009778_040 Hb_009778_040 Hb_005656_190--Hb_009778_040 Hb_003181_050 Hb_003181_050 Hb_005656_190--Hb_003181_050 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70527 1.60383 23.2204 32.3149 1.73284 1.19706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.8278 57.7427 84.2532 2.97545 23.8631

CAGE analysis