Hb_000679_220

Information

Type -
Description -
Location Contig679: 146859-148001
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27040g
description POPTRDRAFT_561898; hypothetical protein
nr
ID XP_012076561.1
description PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53701: 147179-147657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_220 0.0 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
2 Hb_094900_010 0.1826989418 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_001059_170 0.1953939595 - - hexose transporter 1 [Hevea brasiliensis]
4 Hb_000389_050 0.209868802 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
5 Hb_002936_080 0.2129386976 - - Protein bem46, putative [Ricinus communis]
6 Hb_005344_030 0.2171285324 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
7 Hb_004672_030 0.22756123 - - proline oxidase [Manihot esculenta]
8 Hb_001433_130 0.2278608067 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
9 Hb_001004_150 0.2395752297 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
10 Hb_001229_020 0.2399092016 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_004128_070 0.2489779054 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
12 Hb_023313_010 0.250003883 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
13 Hb_004346_030 0.2547552841 - - sucrose phosphate phosphatase, putative [Ricinus communis]
14 Hb_004162_260 0.2549538344 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
15 Hb_016564_010 0.2556834282 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
16 Hb_178063_010 0.2559948774 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
17 Hb_000001_080 0.2573334951 - - -
18 Hb_000377_150 0.2576967138 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_002918_050 0.2589097464 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
20 Hb_000170_120 0.2593780186 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000679_220 Hb_000679_220 Hb_094900_010 Hb_094900_010 Hb_000679_220--Hb_094900_010 Hb_001059_170 Hb_001059_170 Hb_000679_220--Hb_001059_170 Hb_000389_050 Hb_000389_050 Hb_000679_220--Hb_000389_050 Hb_002936_080 Hb_002936_080 Hb_000679_220--Hb_002936_080 Hb_005344_030 Hb_005344_030 Hb_000679_220--Hb_005344_030 Hb_004672_030 Hb_004672_030 Hb_000679_220--Hb_004672_030 Hb_119504_010 Hb_119504_010 Hb_094900_010--Hb_119504_010 Hb_159036_010 Hb_159036_010 Hb_094900_010--Hb_159036_010 Hb_003523_040 Hb_003523_040 Hb_094900_010--Hb_003523_040 Hb_122556_010 Hb_122556_010 Hb_094900_010--Hb_122556_010 Hb_094900_010--Hb_005344_030 Hb_001059_160 Hb_001059_160 Hb_001059_170--Hb_001059_160 Hb_002260_030 Hb_002260_030 Hb_001059_170--Hb_002260_030 Hb_001357_120 Hb_001357_120 Hb_001059_170--Hb_001357_120 Hb_002918_050 Hb_002918_050 Hb_001059_170--Hb_002918_050 Hb_001059_150 Hb_001059_150 Hb_001059_170--Hb_001059_150 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_004162_260 Hb_004162_260 Hb_002936_080--Hb_004162_260 Hb_000530_120 Hb_000530_120 Hb_002936_080--Hb_000530_120 Hb_002936_080--Hb_004672_030 Hb_001045_040 Hb_001045_040 Hb_002936_080--Hb_001045_040 Hb_002609_040 Hb_002609_040 Hb_002936_080--Hb_002609_040 Hb_001823_060 Hb_001823_060 Hb_002936_080--Hb_001823_060 Hb_006132_030 Hb_006132_030 Hb_005344_030--Hb_006132_030 Hb_005344_030--Hb_002918_050 Hb_000052_020 Hb_000052_020 Hb_005344_030--Hb_000052_020 Hb_000429_090 Hb_000429_090 Hb_005344_030--Hb_000429_090 Hb_000622_240 Hb_000622_240 Hb_005344_030--Hb_000622_240 Hb_091194_010 Hb_091194_010 Hb_005344_030--Hb_091194_010 Hb_004128_070 Hb_004128_070 Hb_004672_030--Hb_004128_070 Hb_000525_050 Hb_000525_050 Hb_004672_030--Hb_000525_050 Hb_005846_030 Hb_005846_030 Hb_004672_030--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004672_030--Hb_065525_120 Hb_004346_030 Hb_004346_030 Hb_004672_030--Hb_004346_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.730754 0.0914397 0.844329 1.68055 0 0.0803539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54091 2.05643 5.73384 0.37959 4.79973

CAGE analysis