Hb_000389_050

Information

Type -
Description -
Location Contig389: 135565-140518
Sequence    

Annotation

kegg
ID rcu:RCOM_0092810
description protein binding protein, putative
nr
ID XP_012093273.1
description PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
swissprot
ID Q55874
description Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=3 SV=1
trembl
ID A0A067LIF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20060 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38955: 135490-140571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_050 0.0 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
2 Hb_016564_010 0.1868542714 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
3 Hb_000465_320 0.1882546672 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
4 Hb_042202_060 0.1992247703 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
5 Hb_020301_030 0.2023407589 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_000365_370 0.2041332546 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000679_220 0.209868802 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
8 Hb_007741_100 0.2107493082 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
9 Hb_002609_040 0.2107693612 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
10 Hb_001229_020 0.2109473907 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_000170_120 0.2183380918 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001307_110 0.218839817 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
13 Hb_004128_070 0.2196325528 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
14 Hb_001004_150 0.2220043887 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
15 Hb_002007_340 0.2229197038 - - cyclin-dependent protein kinase, putative [Ricinus communis]
16 Hb_002320_080 0.2243956139 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
17 Hb_001153_120 0.2270178107 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
18 Hb_002150_070 0.227230694 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
19 Hb_000107_510 0.2284336281 - - phosphate transporter [Manihot esculenta]
20 Hb_023313_010 0.2288305599 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000389_050 Hb_000389_050 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220 Hb_001454_100 Hb_001454_100 Hb_016564_010--Hb_001454_100 Hb_001153_120 Hb_001153_120 Hb_016564_010--Hb_001153_120 Hb_001004_150 Hb_001004_150 Hb_016564_010--Hb_001004_150 Hb_025466_010 Hb_025466_010 Hb_016564_010--Hb_025466_010 Hb_003097_060 Hb_003097_060 Hb_016564_010--Hb_003097_060 Hb_003453_050 Hb_003453_050 Hb_000465_320--Hb_003453_050 Hb_031527_110 Hb_031527_110 Hb_000465_320--Hb_031527_110 Hb_000477_040 Hb_000477_040 Hb_000465_320--Hb_000477_040 Hb_000107_510 Hb_000107_510 Hb_000465_320--Hb_000107_510 Hb_011606_020 Hb_011606_020 Hb_000465_320--Hb_011606_020 Hb_001481_130 Hb_001481_130 Hb_000465_320--Hb_001481_130 Hb_002876_270 Hb_002876_270 Hb_042202_060--Hb_002876_270 Hb_001863_020 Hb_001863_020 Hb_042202_060--Hb_001863_020 Hb_006816_470 Hb_006816_470 Hb_042202_060--Hb_006816_470 Hb_001138_060 Hb_001138_060 Hb_042202_060--Hb_001138_060 Hb_005167_020 Hb_005167_020 Hb_042202_060--Hb_005167_020 Hb_010422_070 Hb_010422_070 Hb_042202_060--Hb_010422_070 Hb_075807_010 Hb_075807_010 Hb_020301_030--Hb_075807_010 Hb_009615_120 Hb_009615_120 Hb_020301_030--Hb_009615_120 Hb_002609_040 Hb_002609_040 Hb_020301_030--Hb_002609_040 Hb_001946_330 Hb_001946_330 Hb_020301_030--Hb_001946_330 Hb_036988_010 Hb_036988_010 Hb_020301_030--Hb_036988_010 Hb_000723_290 Hb_000723_290 Hb_000365_370--Hb_000723_290 Hb_000365_370--Hb_003453_050 Hb_000167_050 Hb_000167_050 Hb_000365_370--Hb_000167_050 Hb_000365_370--Hb_000107_510 Hb_010577_040 Hb_010577_040 Hb_000365_370--Hb_010577_040 Hb_004128_070 Hb_004128_070 Hb_000365_370--Hb_004128_070 Hb_094900_010 Hb_094900_010 Hb_000679_220--Hb_094900_010 Hb_001059_170 Hb_001059_170 Hb_000679_220--Hb_001059_170 Hb_002936_080 Hb_002936_080 Hb_000679_220--Hb_002936_080 Hb_005344_030 Hb_005344_030 Hb_000679_220--Hb_005344_030 Hb_004672_030 Hb_004672_030 Hb_000679_220--Hb_004672_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20137 1.26057 2.03451 4.35799 0.123076 0.266399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58939 3.4347 8.48237 0.4914 6.49016

CAGE analysis