Hb_001481_130

Information

Type -
Description -
Location Contig1481: 182026-183720
Sequence    

Annotation

kegg
ID rcu:RCOM_0006170
description hypothetical protein
nr
ID XP_002531465.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZP6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0006170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12117: 182089-182252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005348_110 0.1380160408 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_011139_040 0.1422863636 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
4 Hb_000849_120 0.1426536848 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
5 Hb_069355_010 0.1611322896 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
6 Hb_000465_320 0.1650589494 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
7 Hb_033413_010 0.1669094161 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_011606_020 0.1677327336 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
9 Hb_025466_010 0.1692803888 - - unnamed protein product [Vitis vinifera]
10 Hb_088327_010 0.1698312986 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
11 Hb_000946_110 0.1724808716 - - GTP cyclohydrolase I, putative [Ricinus communis]
12 Hb_002876_270 0.1775903905 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
13 Hb_026889_040 0.1794491695 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_000477_040 0.1802767077 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011224_100 0.1811305954 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000671_130 0.1838524056 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
17 Hb_004162_060 0.1842282609 - - unnamed protein product [Vitis vinifera]
18 Hb_000106_030 0.1867843829 - - amino acid transporter, putative [Ricinus communis]
19 Hb_000704_040 0.1868678627 - - aquaporin sip2.1, putative [Ricinus communis]
20 Hb_001486_190 0.1880283635 - - hypothetical protein JCGZ_02702 [Jatropha curcas]

Gene co-expression network

sample Hb_001481_130 Hb_001481_130 Hb_005348_110 Hb_005348_110 Hb_001481_130--Hb_005348_110 Hb_011139_040 Hb_011139_040 Hb_001481_130--Hb_011139_040 Hb_000849_120 Hb_000849_120 Hb_001481_130--Hb_000849_120 Hb_069355_010 Hb_069355_010 Hb_001481_130--Hb_069355_010 Hb_000465_320 Hb_000465_320 Hb_001481_130--Hb_000465_320 Hb_033413_010 Hb_033413_010 Hb_001481_130--Hb_033413_010 Hb_009674_050 Hb_009674_050 Hb_005348_110--Hb_009674_050 Hb_003746_010 Hb_003746_010 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_009252_010 Hb_009252_010 Hb_005348_110--Hb_009252_010 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030 Hb_011606_020 Hb_011606_020 Hb_011139_040--Hb_011606_020 Hb_043792_040 Hb_043792_040 Hb_011139_040--Hb_043792_040 Hb_000027_260 Hb_000027_260 Hb_011139_040--Hb_000027_260 Hb_000243_350 Hb_000243_350 Hb_011139_040--Hb_000243_350 Hb_074197_040 Hb_074197_040 Hb_011139_040--Hb_074197_040 Hb_001014_070 Hb_001014_070 Hb_011139_040--Hb_001014_070 Hb_000110_060 Hb_000110_060 Hb_000849_120--Hb_000110_060 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_004326_010 Hb_004326_010 Hb_000849_120--Hb_004326_010 Hb_000181_460 Hb_000181_460 Hb_000849_120--Hb_000181_460 Hb_000849_120--Hb_009252_010 Hb_000849_120--Hb_005348_110 Hb_000300_520 Hb_000300_520 Hb_069355_010--Hb_000300_520 Hb_020805_140 Hb_020805_140 Hb_069355_010--Hb_020805_140 Hb_000210_100 Hb_000210_100 Hb_069355_010--Hb_000210_100 Hb_001289_020 Hb_001289_020 Hb_069355_010--Hb_001289_020 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_003453_050 Hb_003453_050 Hb_000465_320--Hb_003453_050 Hb_031527_110 Hb_031527_110 Hb_000465_320--Hb_031527_110 Hb_000477_040 Hb_000477_040 Hb_000465_320--Hb_000477_040 Hb_000107_510 Hb_000107_510 Hb_000465_320--Hb_000107_510 Hb_000465_320--Hb_011606_020 Hb_001006_220 Hb_001006_220 Hb_033413_010--Hb_001006_220 Hb_026889_040 Hb_026889_040 Hb_033413_010--Hb_026889_040 Hb_091349_010 Hb_091349_010 Hb_033413_010--Hb_091349_010 Hb_088327_010 Hb_088327_010 Hb_033413_010--Hb_088327_010 Hb_000703_280 Hb_000703_280 Hb_033413_010--Hb_000703_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.435115 2.00932 1.75619 9.37405 1.28073 0.636554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62982 1.53876 5.9282 2.13789 6.28926

CAGE analysis