Hb_000210_100

Information

Type -
Description -
Location Contig210: 164461-165852
Sequence    

Annotation

kegg
ID rcu:RCOM_0308790
description pepsin A, putative
nr
ID XP_002534234.1
description pepsin A, putative [Ricinus communis]
swissprot
ID Q3EBM5
description Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1
trembl
ID B9T7L5
description Pepsin A, putative OS=Ricinus communis GN=RCOM_0308790 PE=4 SV=1
Gene Ontology
ID GO:0005618
description eukaryotic aspartyl protease family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21735: 164415-166211
cDNA
(Sanger)
(ID:Location)		 043_I05.ab1: 164415-165224

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_100 0.0 - - pepsin A, putative [Ricinus communis]
2 Hb_001454_100 0.121108396 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
3 Hb_025466_020 0.1526417296 - - tubulin beta-6 [Brassica oleracea var. italica]
4 Hb_069355_010 0.1590447221 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
5 Hb_000260_280 0.1606223091 - - auxin:hydrogen symporter, putative [Ricinus communis]
6 Hb_003878_050 0.1673326835 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
7 Hb_020805_140 0.1717738215 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
8 Hb_000477_040 0.1717740962 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007416_100 0.1860894899 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
10 Hb_001289_020 0.1891048774 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
11 Hb_000310_100 0.1911486698 - - conserved hypothetical protein [Ricinus communis]
12 Hb_016564_010 0.1964969742 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
13 Hb_025466_010 0.1965969585 - - unnamed protein product [Vitis vinifera]
14 Hb_004162_060 0.2017809128 - - unnamed protein product [Vitis vinifera]
15 Hb_004204_110 0.2045569662 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
16 Hb_006903_030 0.2059258252 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
17 Hb_001989_100 0.209071221 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
18 Hb_029920_020 0.2097802543 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
19 Hb_015675_030 0.2124266345 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
20 Hb_001369_630 0.2125046542 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000210_100 Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_025466_020 Hb_025466_020 Hb_000210_100--Hb_025466_020 Hb_069355_010 Hb_069355_010 Hb_000210_100--Hb_069355_010 Hb_000260_280 Hb_000260_280 Hb_000210_100--Hb_000260_280 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_020805_140 Hb_020805_140 Hb_000210_100--Hb_020805_140 Hb_001454_100--Hb_025466_020 Hb_000310_100 Hb_000310_100 Hb_001454_100--Hb_000310_100 Hb_016564_010 Hb_016564_010 Hb_001454_100--Hb_016564_010 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_001454_100--Hb_000260_280 Hb_025466_010 Hb_025466_010 Hb_025466_020--Hb_025466_010 Hb_006903_030 Hb_006903_030 Hb_025466_020--Hb_006903_030 Hb_048476_060 Hb_048476_060 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_000300_520 Hb_000300_520 Hb_069355_010--Hb_000300_520 Hb_069355_010--Hb_020805_140 Hb_001481_130 Hb_001481_130 Hb_069355_010--Hb_001481_130 Hb_001289_020 Hb_001289_020 Hb_069355_010--Hb_001289_020 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_032972_010 Hb_032972_010 Hb_000260_280--Hb_032972_010 Hb_000260_280--Hb_025466_020 Hb_029920_020 Hb_029920_020 Hb_000260_280--Hb_029920_020 Hb_000260_280--Hb_006903_030 Hb_026889_040 Hb_026889_040 Hb_003878_050--Hb_026889_040 Hb_000477_040 Hb_000477_040 Hb_003878_050--Hb_000477_040 Hb_000703_280 Hb_000703_280 Hb_003878_050--Hb_000703_280 Hb_004158_020 Hb_004158_020 Hb_003878_050--Hb_004158_020 Hb_001369_630 Hb_001369_630 Hb_003878_050--Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_003878_050--Hb_000935_040 Hb_020805_140--Hb_026527_010 Hb_000107_350 Hb_000107_350 Hb_020805_140--Hb_000107_350 Hb_020805_140--Hb_025466_020 Hb_000345_080 Hb_000345_080 Hb_020805_140--Hb_000345_080 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41526 4.73824 17.9868 92.8288 1.26206 1.24289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7715 14.546 39.6912 6.75441 27.3149

CAGE analysis