Hb_088327_010

Information

Type -
Description -
Location Contig88327: 382-786
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09080g
description POPTRDRAFT_551519; glycine hydroxymethyltransferase family protein
nr
ID XP_012078135.1
description PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
swissprot
ID Q9LM59
description Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1
trembl
ID A0A067K951
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_12023 PE=3 SV=1
Gene Ontology
ID GO:0004372
description glycine hydroxymethyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088327_010 0.0 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
2 Hb_000946_110 0.1311324745 - - GTP cyclohydrolase I, putative [Ricinus communis]
3 Hb_091349_010 0.1406939326 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
4 Hb_038564_010 0.1413235904 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
5 Hb_002043_040 0.1428131056 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
6 Hb_000704_040 0.1467549162 - - aquaporin sip2.1, putative [Ricinus communis]
7 Hb_000381_010 0.1500351511 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
8 Hb_003911_020 0.1503012378 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
9 Hb_003141_070 0.1530809475 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
10 Hb_000019_180 0.1567782066 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
11 Hb_000107_110 0.1613271148 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000679_230 0.1647362538 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
13 Hb_000369_120 0.1663724209 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
14 Hb_010577_010 0.1678667822 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
15 Hb_001894_070 0.1682521202 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
16 Hb_004935_060 0.1687911051 - - Uncharacterized protein isoform 2 [Theobroma cacao]
17 Hb_002344_100 0.1688288157 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
18 Hb_001481_130 0.1698312986 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000060_050 0.1704409457 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
20 Hb_026889_040 0.1708570038 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_088327_010 Hb_088327_010 Hb_000946_110 Hb_000946_110 Hb_088327_010--Hb_000946_110 Hb_091349_010 Hb_091349_010 Hb_088327_010--Hb_091349_010 Hb_038564_010 Hb_038564_010 Hb_088327_010--Hb_038564_010 Hb_002043_040 Hb_002043_040 Hb_088327_010--Hb_002043_040 Hb_000704_040 Hb_000704_040 Hb_088327_010--Hb_000704_040 Hb_000381_010 Hb_000381_010 Hb_088327_010--Hb_000381_010 Hb_000297_120 Hb_000297_120 Hb_000946_110--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_000946_110--Hb_004046_030 Hb_002804_040 Hb_002804_040 Hb_000946_110--Hb_002804_040 Hb_000946_110--Hb_002043_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_006277_010 Hb_006277_010 Hb_000946_110--Hb_006277_010 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_000586_030 Hb_000586_030 Hb_038564_010--Hb_000586_030 Hb_142343_010 Hb_142343_010 Hb_038564_010--Hb_142343_010 Hb_003697_050 Hb_003697_050 Hb_038564_010--Hb_003697_050 Hb_000019_180 Hb_000019_180 Hb_038564_010--Hb_000019_180 Hb_138475_010 Hb_138475_010 Hb_038564_010--Hb_138475_010 Hb_002043_040--Hb_000297_120 Hb_000060_050 Hb_000060_050 Hb_002043_040--Hb_000060_050 Hb_001789_150 Hb_001789_150 Hb_002043_040--Hb_001789_150 Hb_000406_130 Hb_000406_130 Hb_002043_040--Hb_000406_130 Hb_001898_080 Hb_001898_080 Hb_002043_040--Hb_001898_080 Hb_000928_190 Hb_000928_190 Hb_000704_040--Hb_000928_190 Hb_002344_100 Hb_002344_100 Hb_000704_040--Hb_002344_100 Hb_000704_040--Hb_033152_070 Hb_000243_350 Hb_000243_350 Hb_000704_040--Hb_000243_350 Hb_002325_070 Hb_002325_070 Hb_000704_040--Hb_002325_070 Hb_009898_040 Hb_009898_040 Hb_000704_040--Hb_009898_040 Hb_001142_010 Hb_001142_010 Hb_000381_010--Hb_001142_010 Hb_000656_330 Hb_000656_330 Hb_000381_010--Hb_000656_330 Hb_000381_010--Hb_000946_110 Hb_015675_030 Hb_015675_030 Hb_000381_010--Hb_015675_030 Hb_000106_030 Hb_000106_030 Hb_000381_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_000381_010--Hb_010288_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1191 15.7962 7.8619 93.6805 7.68767 29.248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3523 25.6794 55.2546 25.7441 52.8753

CAGE analysis