Hb_142343_010

Information

Type -
Description -
Location Contig142343: 4-886
Sequence    

Annotation

kegg
ID rcu:RCOM_0160690
description ATP binding protein, putative
nr
ID XP_002533675.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LZA4
description Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=2 SV=1
trembl
ID B9T606
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0160690 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142343_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_152371_010 0.1167775608 - - RNA-binding KH domain-containing protein [Theobroma cacao]
3 Hb_002311_340 0.1202459647 - - phospholipase d zeta, putative [Ricinus communis]
4 Hb_163975_010 0.1210501137 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
5 Hb_138475_010 0.1225106992 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
6 Hb_000228_110 0.1242357238 - - unnamed protein product [Vitis vinifera]
7 Hb_002748_030 0.1290974904 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_007383_020 0.1293388253 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001318_050 0.1302534875 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_001157_110 0.1309241044 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
11 Hb_000140_280 0.1311192449 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
12 Hb_007054_010 0.1313383993 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
13 Hb_098315_080 0.1329523562 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
14 Hb_007558_100 0.1340438855 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
15 Hb_000095_080 0.1365834217 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
16 Hb_000504_070 0.1372332316 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
17 Hb_000096_160 0.1373893892 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
18 Hb_003697_050 0.138533555 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
19 Hb_002414_060 0.1387033895 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
20 Hb_000392_190 0.1395825464 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_142343_010 Hb_142343_010 Hb_152371_010 Hb_152371_010 Hb_142343_010--Hb_152371_010 Hb_002311_340 Hb_002311_340 Hb_142343_010--Hb_002311_340 Hb_163975_010 Hb_163975_010 Hb_142343_010--Hb_163975_010 Hb_138475_010 Hb_138475_010 Hb_142343_010--Hb_138475_010 Hb_000228_110 Hb_000228_110 Hb_142343_010--Hb_000228_110 Hb_002748_030 Hb_002748_030 Hb_142343_010--Hb_002748_030 Hb_025194_100 Hb_025194_100 Hb_152371_010--Hb_025194_100 Hb_000095_080 Hb_000095_080 Hb_152371_010--Hb_000095_080 Hb_000310_090 Hb_000310_090 Hb_152371_010--Hb_000310_090 Hb_003777_320 Hb_003777_320 Hb_152371_010--Hb_003777_320 Hb_002289_080 Hb_002289_080 Hb_152371_010--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_152371_010--Hb_002284_230 Hb_003847_030 Hb_003847_030 Hb_002311_340--Hb_003847_030 Hb_000504_070 Hb_000504_070 Hb_002311_340--Hb_000504_070 Hb_028227_070 Hb_028227_070 Hb_002311_340--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_002311_340--Hb_109002_020 Hb_001414_030 Hb_001414_030 Hb_002311_340--Hb_001414_030 Hb_082793_010 Hb_082793_010 Hb_163975_010--Hb_082793_010 Hb_002748_020 Hb_002748_020 Hb_163975_010--Hb_002748_020 Hb_084670_010 Hb_084670_010 Hb_163975_010--Hb_084670_010 Hb_002908_060 Hb_002908_060 Hb_163975_010--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_163975_010--Hb_000053_060 Hb_007558_100 Hb_007558_100 Hb_138475_010--Hb_007558_100 Hb_008970_030 Hb_008970_030 Hb_138475_010--Hb_008970_030 Hb_002414_060 Hb_002414_060 Hb_138475_010--Hb_002414_060 Hb_000917_130 Hb_000917_130 Hb_138475_010--Hb_000917_130 Hb_062537_010 Hb_062537_010 Hb_138475_010--Hb_062537_010 Hb_000787_160 Hb_000787_160 Hb_138475_010--Hb_000787_160 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_000096_160 Hb_000096_160 Hb_000228_110--Hb_000096_160 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_001085_240 Hb_001085_240 Hb_000228_110--Hb_001085_240 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_003633_050 Hb_003633_050 Hb_000228_110--Hb_003633_050 Hb_002748_030--Hb_002311_340 Hb_001157_110 Hb_001157_110 Hb_002748_030--Hb_001157_110 Hb_000020_120 Hb_000020_120 Hb_002748_030--Hb_000020_120 Hb_002748_030--Hb_163975_010 Hb_000327_160 Hb_000327_160 Hb_002748_030--Hb_000327_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275426 0.507498 0.444649 1.52173 0.277419 1.5387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817173 1.09209 1.25986 2.14398 1.01552

CAGE analysis