Hb_009615_120

Information

Type -
Description -
Location Contig9615: 85688-90078
Sequence    

Annotation

kegg
ID zma:103632453
description transposon Tf2-1 polyprotein
nr
ID AAG51046.1
description gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q9LHM4
description Gypsy/Ty-3 retroelement polyprotein; 69905-74404 OS=Arabidopsis thaliana GN=T21B14.24 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_120 0.0 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
2 Hb_000329_290 0.1230123167 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
3 Hb_000656_310 0.1400523912 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
4 Hb_032717_060 0.1434506868 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
5 Hb_001214_180 0.1519045593 - - -
6 Hb_140459_010 0.1548644711 - - thioredoxin f-type, putative [Ricinus communis]
7 Hb_009778_060 0.1565503052 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
8 Hb_001541_070 0.1609771522 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
9 Hb_011310_080 0.1640640352 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
10 Hb_000700_080 0.1643997717 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000086_630 0.1653312025 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
12 Hb_001138_060 0.1673561068 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
13 Hb_000035_350 0.1689631213 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_000615_050 0.1697242331 - - Potassium transporter 11 family protein [Populus trichocarpa]
15 Hb_002686_090 0.1698505404 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
16 Hb_000482_040 0.1699905649 - - Protein YME1, putative [Ricinus communis]
17 Hb_001723_060 0.1706810677 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
18 Hb_000270_120 0.1710928293 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
19 Hb_001951_220 0.1724437716 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
20 Hb_024468_010 0.1731812437 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]

Gene co-expression network

sample Hb_009615_120 Hb_009615_120 Hb_000329_290 Hb_000329_290 Hb_009615_120--Hb_000329_290 Hb_000656_310 Hb_000656_310 Hb_009615_120--Hb_000656_310 Hb_032717_060 Hb_032717_060 Hb_009615_120--Hb_032717_060 Hb_001214_180 Hb_001214_180 Hb_009615_120--Hb_001214_180 Hb_140459_010 Hb_140459_010 Hb_009615_120--Hb_140459_010 Hb_009778_060 Hb_009778_060 Hb_009615_120--Hb_009778_060 Hb_000482_040 Hb_000482_040 Hb_000329_290--Hb_000482_040 Hb_032202_040 Hb_032202_040 Hb_000329_290--Hb_032202_040 Hb_001195_450 Hb_001195_450 Hb_000329_290--Hb_001195_450 Hb_001226_140 Hb_001226_140 Hb_000329_290--Hb_001226_140 Hb_001723_060 Hb_001723_060 Hb_000329_290--Hb_001723_060 Hb_000656_310--Hb_001226_140 Hb_000465_280 Hb_000465_280 Hb_000656_310--Hb_000465_280 Hb_000504_180 Hb_000504_180 Hb_000656_310--Hb_000504_180 Hb_022092_030 Hb_022092_030 Hb_000656_310--Hb_022092_030 Hb_001080_300 Hb_001080_300 Hb_000656_310--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_000656_310--Hb_138585_080 Hb_006740_030 Hb_006740_030 Hb_032717_060--Hb_006740_030 Hb_032717_060--Hb_000482_040 Hb_002542_110 Hb_002542_110 Hb_032717_060--Hb_002542_110 Hb_001405_070 Hb_001405_070 Hb_032717_060--Hb_001405_070 Hb_032717_060--Hb_001226_140 Hb_032717_060--Hb_009778_060 Hb_000120_040 Hb_000120_040 Hb_001214_180--Hb_000120_040 Hb_000417_200 Hb_000417_200 Hb_001214_180--Hb_000417_200 Hb_001214_180--Hb_009778_060 Hb_001214_180--Hb_001405_070 Hb_001214_180--Hb_000482_040 Hb_001138_060 Hb_001138_060 Hb_001214_180--Hb_001138_060 Hb_183612_070 Hb_183612_070 Hb_140459_010--Hb_183612_070 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_009778_060--Hb_000482_040 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_009778_060--Hb_001195_450 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167733 0.100305 0.0509335 0.0754615 0.00523188 0.0454887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760323 0.0698056 0.133799 0.04743 0.191909

CAGE analysis