Hb_000329_290

Information

Type transcription factor
Description TF Family: GRAS
Location Contig329: 176610-178775
Sequence    

Annotation

kegg
ID rcu:RCOM_1610560
description hypothetical protein
nr
ID XP_012083623.1
description PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
swissprot
ID O81316
description Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1
trembl
ID B9RD72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1610560 PE=4 SV=1
Gene Ontology
ID GO:0006351
description gras family transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_290 0.0 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
2 Hb_000482_040 0.1092574433 - - Protein YME1, putative [Ricinus communis]
3 Hb_032202_040 0.1155755945 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
4 Hb_009615_120 0.1230123167 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
5 Hb_001195_450 0.1257935528 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
6 Hb_001226_140 0.1260460711 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
7 Hb_001723_060 0.1307503519 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
8 Hb_001541_070 0.1310452226 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
9 Hb_009778_060 0.1313851617 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
10 Hb_000008_440 0.1334038089 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
11 Hb_002686_090 0.1339829667 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
12 Hb_000130_220 0.1340007654 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
13 Hb_001138_060 0.1349572146 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
14 Hb_000120_640 0.1349855777 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001766_050 0.1356214821 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
16 Hb_010344_050 0.1369728747 - - Adagio 1 -like protein [Gossypium arboreum]
17 Hb_000913_020 0.1379232961 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_032717_060 0.13856154 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
19 Hb_001951_220 0.1387301994 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
20 Hb_011386_020 0.1395927902 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000329_290 Hb_000329_290 Hb_000482_040 Hb_000482_040 Hb_000329_290--Hb_000482_040 Hb_032202_040 Hb_032202_040 Hb_000329_290--Hb_032202_040 Hb_009615_120 Hb_009615_120 Hb_000329_290--Hb_009615_120 Hb_001195_450 Hb_001195_450 Hb_000329_290--Hb_001195_450 Hb_001226_140 Hb_001226_140 Hb_000329_290--Hb_001226_140 Hb_001723_060 Hb_001723_060 Hb_000329_290--Hb_001723_060 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_000008_440 Hb_000008_440 Hb_032202_040--Hb_000008_440 Hb_032202_040--Hb_001226_140 Hb_001818_100 Hb_001818_100 Hb_032202_040--Hb_001818_100 Hb_007533_040 Hb_007533_040 Hb_032202_040--Hb_007533_040 Hb_032202_040--Hb_000482_040 Hb_000027_260 Hb_000027_260 Hb_032202_040--Hb_000027_260 Hb_000656_310 Hb_000656_310 Hb_009615_120--Hb_000656_310 Hb_032717_060 Hb_032717_060 Hb_009615_120--Hb_032717_060 Hb_001214_180 Hb_001214_180 Hb_009615_120--Hb_001214_180 Hb_140459_010 Hb_140459_010 Hb_009615_120--Hb_140459_010 Hb_009615_120--Hb_009778_060 Hb_001195_450--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001195_450--Hb_002762_110 Hb_005511_140 Hb_005511_140 Hb_001195_450--Hb_005511_140 Hb_001195_450--Hb_009778_060 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_000282_080 Hb_000282_080 Hb_001195_450--Hb_000282_080 Hb_022092_030 Hb_022092_030 Hb_001226_140--Hb_022092_030 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_001723_060--Hb_002762_110 Hb_001723_060--Hb_009778_060 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001214_050 Hb_001214_050 Hb_001723_060--Hb_001214_050 Hb_001723_060--Hb_000482_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8427 19.3335 18.0239 18.8292 4.08898 14.8765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5129 17.2039 41.3118 14.4289 49.4587

CAGE analysis