Hb_004672_030

Information

Type -
Description -
Location Contig4672: 20020-22867
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14250g
description hypothetical protein
nr
ID AGC51786.1
description proline oxidase [Manihot esculenta]
swissprot
ID Q6NKX1
description Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1
trembl
ID V9M5A2
description Proline oxidase OS=Manihot esculenta GN=ProDH PE=2 SV=1
Gene Ontology
ID GO:0004657
description proline dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44113: 20057-20556 , PASA_asmbl_44114: 20654-22595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004672_030 0.0 - - proline oxidase [Manihot esculenta]
2 Hb_004128_070 0.1374764585 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
3 Hb_000525_050 0.1625869565 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005846_030 0.1637378913 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
5 Hb_065525_120 0.1700549767 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
6 Hb_002936_080 0.1806605064 - - Protein bem46, putative [Ricinus communis]
7 Hb_004346_030 0.1808271038 - - sucrose phosphate phosphatase, putative [Ricinus communis]
8 Hb_002374_300 0.1809435163 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
9 Hb_014834_130 0.181045229 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
10 Hb_007110_010 0.1831182265 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
11 Hb_000032_370 0.1860069251 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
12 Hb_011379_010 0.1885739709 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_001712_020 0.1900126194 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
14 Hb_000167_050 0.1907369535 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
15 Hb_004317_030 0.1923712518 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
16 Hb_000365_370 0.1940724317 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000049_110 0.1942039047 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
18 Hb_000377_150 0.1959129064 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_001435_020 0.1966692752 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
20 Hb_009780_050 0.1980360616 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004672_030 Hb_004672_030 Hb_004128_070 Hb_004128_070 Hb_004672_030--Hb_004128_070 Hb_000525_050 Hb_000525_050 Hb_004672_030--Hb_000525_050 Hb_005846_030 Hb_005846_030 Hb_004672_030--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004672_030--Hb_065525_120 Hb_002936_080 Hb_002936_080 Hb_004672_030--Hb_002936_080 Hb_004346_030 Hb_004346_030 Hb_004672_030--Hb_004346_030 Hb_000032_370 Hb_000032_370 Hb_004128_070--Hb_000032_370 Hb_001399_010 Hb_001399_010 Hb_004128_070--Hb_001399_010 Hb_004128_070--Hb_005846_030 Hb_010422_070 Hb_010422_070 Hb_004128_070--Hb_010422_070 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300 Hb_003411_090 Hb_003411_090 Hb_000525_050--Hb_003411_090 Hb_012244_010 Hb_012244_010 Hb_000525_050--Hb_012244_010 Hb_000525_050--Hb_001399_010 Hb_001863_020 Hb_001863_020 Hb_000525_050--Hb_001863_020 Hb_000525_050--Hb_004128_070 Hb_029920_030 Hb_029920_030 Hb_000525_050--Hb_029920_030 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_065525_120--Hb_000032_370 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_065525_120--Hb_009780_050 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_004162_260 Hb_004162_260 Hb_002936_080--Hb_004162_260 Hb_000530_120 Hb_000530_120 Hb_002936_080--Hb_000530_120 Hb_001045_040 Hb_001045_040 Hb_002936_080--Hb_001045_040 Hb_002609_040 Hb_002609_040 Hb_002936_080--Hb_002609_040 Hb_001823_060 Hb_001823_060 Hb_002936_080--Hb_001823_060 Hb_007831_020 Hb_007831_020 Hb_004346_030--Hb_007831_020 Hb_002503_020 Hb_002503_020 Hb_004346_030--Hb_002503_020 Hb_002284_310 Hb_002284_310 Hb_004346_030--Hb_002284_310 Hb_000174_030 Hb_000174_030 Hb_004346_030--Hb_000174_030 Hb_000617_200 Hb_000617_200 Hb_004346_030--Hb_000617_200 Hb_004225_080 Hb_004225_080 Hb_004346_030--Hb_004225_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4673 3.27169 17.039 16.6549 0.70776 1.74039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3976 15.8536 16.8757 3.00243 32.3285

CAGE analysis