Hb_007831_020

Information

Type -
Description -
Location Contig7831: 21856-32111
Sequence    

Annotation

kegg
ID rcu:RCOM_1378760
description hypothetical protein
nr
ID XP_002515669.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPT3
description Membrane protein of ER body-like protein OS=Arabidopsis thaliana GN=MEBL PE=2 SV=1
trembl
ID B9RPK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1378760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58023: 21750-48072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007831_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004346_030 0.1207603505 - - sucrose phosphate phosphatase, putative [Ricinus communis]
3 Hb_002284_310 0.1481141557 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
4 Hb_001014_170 0.1511833899 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
5 Hb_003687_150 0.1519572045 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
6 Hb_000335_030 0.1618162445 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
7 Hb_034013_020 0.1619684704 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
8 Hb_002183_070 0.167761752 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
9 Hb_004191_020 0.168435146 - - PREDICTED: cysteine synthase [Jatropha curcas]
10 Hb_000575_030 0.1700145003 - - unnamed protein product [Vitis vinifera]
11 Hb_003734_110 0.1706343202 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
12 Hb_000617_200 0.1743056995 - - f-actin capping protein alpha, putative [Ricinus communis]
13 Hb_004225_080 0.1746647115 - - -
14 Hb_000914_170 0.1747842326 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
15 Hb_000174_030 0.1748375714 - - hypothetical protein RCOM_1077370 [Ricinus communis]
16 Hb_000317_490 0.1750943299 - - Gibberellin receptor GID1, putative [Ricinus communis]
17 Hb_000331_460 0.1809313681 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_116894_020 0.1816790796 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
19 Hb_000258_330 0.1826731622 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_006442_020 0.1834524835 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]

Gene co-expression network

sample Hb_007831_020 Hb_007831_020 Hb_004346_030 Hb_004346_030 Hb_007831_020--Hb_004346_030 Hb_002284_310 Hb_002284_310 Hb_007831_020--Hb_002284_310 Hb_001014_170 Hb_001014_170 Hb_007831_020--Hb_001014_170 Hb_003687_150 Hb_003687_150 Hb_007831_020--Hb_003687_150 Hb_000335_030 Hb_000335_030 Hb_007831_020--Hb_000335_030 Hb_034013_020 Hb_034013_020 Hb_007831_020--Hb_034013_020 Hb_002503_020 Hb_002503_020 Hb_004346_030--Hb_002503_020 Hb_004346_030--Hb_002284_310 Hb_000174_030 Hb_000174_030 Hb_004346_030--Hb_000174_030 Hb_000617_200 Hb_000617_200 Hb_004346_030--Hb_000617_200 Hb_004225_080 Hb_004225_080 Hb_004346_030--Hb_004225_080 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_000331_460 Hb_000331_460 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_002284_310--Hb_004225_080 Hb_000362_190 Hb_000362_190 Hb_001014_170--Hb_000362_190 Hb_000272_140 Hb_000272_140 Hb_001014_170--Hb_000272_140 Hb_006442_020 Hb_006442_020 Hb_001014_170--Hb_006442_020 Hb_004044_040 Hb_004044_040 Hb_001014_170--Hb_004044_040 Hb_076233_040 Hb_076233_040 Hb_001014_170--Hb_076233_040 Hb_000994_120 Hb_000994_120 Hb_001014_170--Hb_000994_120 Hb_027073_050 Hb_027073_050 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_162275_030 Hb_162275_030 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090 Hb_004191_020 Hb_004191_020 Hb_000335_030--Hb_004191_020 Hb_001341_070 Hb_001341_070 Hb_000335_030--Hb_001341_070 Hb_029510_050 Hb_029510_050 Hb_000335_030--Hb_029510_050 Hb_010883_040 Hb_010883_040 Hb_000335_030--Hb_010883_040 Hb_006478_020 Hb_006478_020 Hb_000335_030--Hb_006478_020 Hb_000676_250 Hb_000676_250 Hb_000335_030--Hb_000676_250 Hb_005162_070 Hb_005162_070 Hb_034013_020--Hb_005162_070 Hb_001946_330 Hb_001946_330 Hb_034013_020--Hb_001946_330 Hb_001898_160 Hb_001898_160 Hb_034013_020--Hb_001898_160 Hb_015198_020 Hb_015198_020 Hb_034013_020--Hb_015198_020 Hb_002027_040 Hb_002027_040 Hb_034013_020--Hb_002027_040 Hb_002799_110 Hb_002799_110 Hb_034013_020--Hb_002799_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5973 3.29706 21.8121 21.794 12.2905 19.2457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.3488 18.5848 48.9897 10.9569 40.1244

CAGE analysis