Hb_001014_170

Information

Type -
Description -
Location Contig1014: 153833-156312
Sequence    

Annotation

kegg
ID rcu:RCOM_1438420
description aspartate semialdehyde dehydrogenase, putative
nr
ID XP_002512674.1
description aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID B9RG05
description Aspartate semialdehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_1438420 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00716: 153694-156218
cDNA
(Sanger)
(ID:Location)		 052_K08.ab1: 154498-156202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_170 0.0 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
2 Hb_000362_190 0.1226432243 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
3 Hb_000272_140 0.1328586755 - - Protein bem46, putative [Ricinus communis]
4 Hb_006442_020 0.1358661081 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
5 Hb_004044_040 0.137979711 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
6 Hb_076233_040 0.1400988311 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
7 Hb_000994_120 0.1427046327 - - unknown [Populus trichocarpa]
8 Hb_003025_040 0.1435611416 - - PREDICTED: elongin-A [Jatropha curcas]
9 Hb_000329_210 0.1449417367 - - Golgi snare 12 isoform 1 [Theobroma cacao]
10 Hb_008103_050 0.1449600662 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
11 Hb_000705_290 0.1453778811 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
12 Hb_003605_160 0.1490045856 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
13 Hb_007831_020 0.1511833899 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004191_020 0.1514383949 - - PREDICTED: cysteine synthase [Jatropha curcas]
15 Hb_003082_030 0.1521580442 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
16 Hb_003849_150 0.1526181238 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
17 Hb_001512_010 0.1526216305 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
18 Hb_001318_250 0.1528952921 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
19 Hb_007002_030 0.1529002012 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
20 Hb_002411_040 0.1532561166 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]

Gene co-expression network

sample Hb_001014_170 Hb_001014_170 Hb_000362_190 Hb_000362_190 Hb_001014_170--Hb_000362_190 Hb_000272_140 Hb_000272_140 Hb_001014_170--Hb_000272_140 Hb_006442_020 Hb_006442_020 Hb_001014_170--Hb_006442_020 Hb_004044_040 Hb_004044_040 Hb_001014_170--Hb_004044_040 Hb_076233_040 Hb_076233_040 Hb_001014_170--Hb_076233_040 Hb_000994_120 Hb_000994_120 Hb_001014_170--Hb_000994_120 Hb_089995_010 Hb_089995_010 Hb_000362_190--Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_000362_190--Hb_005391_040 Hb_000362_190--Hb_076233_040 Hb_003502_060 Hb_003502_060 Hb_000362_190--Hb_003502_060 Hb_001545_160 Hb_001545_160 Hb_000362_190--Hb_001545_160 Hb_006420_080 Hb_006420_080 Hb_000362_190--Hb_006420_080 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_000705_290 Hb_000705_290 Hb_000272_140--Hb_000705_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000042_200 Hb_000042_200 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140 Hb_000983_040 Hb_000983_040 Hb_006442_020--Hb_000983_040 Hb_006442_020--Hb_000705_290 Hb_000617_200 Hb_000617_200 Hb_006442_020--Hb_000617_200 Hb_161175_010 Hb_161175_010 Hb_006442_020--Hb_161175_010 Hb_002221_070 Hb_002221_070 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020 Hb_008103_050 Hb_008103_050 Hb_004044_040--Hb_008103_050 Hb_007894_170 Hb_007894_170 Hb_004044_040--Hb_007894_170 Hb_000174_210 Hb_000174_210 Hb_004044_040--Hb_000174_210 Hb_004044_040--Hb_076233_040 Hb_000331_180 Hb_000331_180 Hb_004044_040--Hb_000331_180 Hb_006816_260 Hb_006816_260 Hb_004044_040--Hb_006816_260 Hb_008841_020 Hb_008841_020 Hb_076233_040--Hb_008841_020 Hb_003126_070 Hb_003126_070 Hb_076233_040--Hb_003126_070 Hb_000329_210 Hb_000329_210 Hb_076233_040--Hb_000329_210 Hb_010883_050 Hb_010883_050 Hb_076233_040--Hb_010883_050 Hb_076233_040--Hb_006420_080 Hb_005054_210 Hb_005054_210 Hb_076233_040--Hb_005054_210 Hb_000994_120--Hb_008103_050 Hb_000141_080 Hb_000141_080 Hb_000994_120--Hb_000141_080 Hb_009787_030 Hb_009787_030 Hb_000994_120--Hb_009787_030 Hb_000599_300 Hb_000599_300 Hb_000994_120--Hb_000599_300 Hb_004127_030 Hb_004127_030 Hb_000994_120--Hb_004127_030 Hb_001703_060 Hb_001703_060 Hb_000994_120--Hb_001703_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5863 4.86921 28.5318 46.1237 11.4157 28.5546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.302 39.7511 31.4564 19.4336 38.9418

CAGE analysis