Hb_122556_010

Information

Type -
Description -
Location Contig122556: 1237-2646
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023432mg
description hypothetical protein
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122556_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_133820_010 0.1913966075 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_159036_010 0.198847736 - - -
4 Hb_003523_040 0.2341695881 - - F15O4.13 [Arabidopsis thaliana]
5 Hb_094900_010 0.260947548 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_011484_010 0.2706967249 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_006132_030 0.3020512185 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
8 Hb_123046_010 0.3024295093 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
9 Hb_000086_040 0.3047046765 - - PREDICTED: legumin A-like [Jatropha curcas]
10 Hb_005344_030 0.3081500556 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
11 Hb_001579_240 0.3144584087 - - galactinol synthase [Manihot esculenta]
12 Hb_004117_350 0.3203749156 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
13 Hb_026239_010 0.3203849153 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000052_020 0.3210537375 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
15 Hb_057207_010 0.3255062551 - - hypothetical protein F383_17010 [Gossypium arboreum]
16 Hb_016482_010 0.3270261456 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_020334_010 0.3298796082 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000154_010 0.3298821524 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_131102_010 0.3300262773 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_003005_040 0.3303458668 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_122556_010 Hb_122556_010 Hb_133820_010 Hb_133820_010 Hb_122556_010--Hb_133820_010 Hb_159036_010 Hb_159036_010 Hb_122556_010--Hb_159036_010 Hb_003523_040 Hb_003523_040 Hb_122556_010--Hb_003523_040 Hb_094900_010 Hb_094900_010 Hb_122556_010--Hb_094900_010 Hb_011484_010 Hb_011484_010 Hb_122556_010--Hb_011484_010 Hb_006132_030 Hb_006132_030 Hb_122556_010--Hb_006132_030 Hb_131102_010 Hb_131102_010 Hb_133820_010--Hb_131102_010 Hb_000154_010 Hb_000154_010 Hb_133820_010--Hb_000154_010 Hb_133820_010--Hb_006132_030 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_016482_010 Hb_016482_010 Hb_159036_010--Hb_016482_010 Hb_159036_010--Hb_094900_010 Hb_159036_010--Hb_133820_010 Hb_159036_010--Hb_003523_040 Hb_012572_020 Hb_012572_020 Hb_159036_010--Hb_012572_020 Hb_043708_010 Hb_043708_010 Hb_003523_040--Hb_043708_010 Hb_003523_040--Hb_094900_010 Hb_003523_040--Hb_133820_010 Hb_123046_010 Hb_123046_010 Hb_003523_040--Hb_123046_010 Hb_000679_220 Hb_000679_220 Hb_094900_010--Hb_000679_220 Hb_119504_010 Hb_119504_010 Hb_094900_010--Hb_119504_010 Hb_005344_030 Hb_005344_030 Hb_094900_010--Hb_005344_030 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010 Hb_006132_030--Hb_005344_030 Hb_006132_030--Hb_000154_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0505951 0.0139975 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0769952 0.0302838 0.0564596 0.0121217 0.125648

CAGE analysis