Hb_016482_010

Information

Type -
Description -
Location Contig16482: 4155-8726
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016482_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_039262_010 0.1580027913 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_159036_010 0.2249145692 - - -
4 Hb_012572_020 0.2482591367 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000032_480 0.2602063258 - - hypothetical protein glysoja_043543 [Glycine soja]
6 Hb_000906_130 0.263706043 - - -
7 Hb_001617_020 0.2853252568 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_000976_230 0.2921977731 - - PREDICTED: probable terpene synthase 4 [Jatropha curcas]
9 Hb_000946_140 0.2952052454 - - -
10 Hb_042202_050 0.298929273 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
11 Hb_004734_050 0.3009132319 - - -
12 Hb_000052_020 0.3094570755 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
13 Hb_009485_010 0.3113987906 - - PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]
14 Hb_008931_010 0.313163013 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
15 Hb_011484_010 0.3142724098 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000731_250 0.3148463031 - - -
17 Hb_036311_020 0.316031677 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_002888_020 0.3167286577 - - -
19 Hb_000853_410 0.3183971876 - - -
20 Hb_000997_360 0.3198077682 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]

Gene co-expression network

sample Hb_016482_010 Hb_016482_010 Hb_039262_010 Hb_039262_010 Hb_016482_010--Hb_039262_010 Hb_159036_010 Hb_159036_010 Hb_016482_010--Hb_159036_010 Hb_012572_020 Hb_012572_020 Hb_016482_010--Hb_012572_020 Hb_000032_480 Hb_000032_480 Hb_016482_010--Hb_000032_480 Hb_000906_130 Hb_000906_130 Hb_016482_010--Hb_000906_130 Hb_001617_020 Hb_001617_020 Hb_016482_010--Hb_001617_020 Hb_002888_020 Hb_002888_020 Hb_039262_010--Hb_002888_020 Hb_000976_230 Hb_000976_230 Hb_039262_010--Hb_000976_230 Hb_036311_020 Hb_036311_020 Hb_039262_010--Hb_036311_020 Hb_000399_010 Hb_000399_010 Hb_039262_010--Hb_000399_010 Hb_042202_050 Hb_042202_050 Hb_039262_010--Hb_042202_050 Hb_122556_010 Hb_122556_010 Hb_159036_010--Hb_122556_010 Hb_094900_010 Hb_094900_010 Hb_159036_010--Hb_094900_010 Hb_133820_010 Hb_133820_010 Hb_159036_010--Hb_133820_010 Hb_003523_040 Hb_003523_040 Hb_159036_010--Hb_003523_040 Hb_159036_010--Hb_012572_020 Hb_000103_350 Hb_000103_350 Hb_012572_020--Hb_000103_350 Hb_012572_020--Hb_039262_010 Hb_011986_010 Hb_011986_010 Hb_012572_020--Hb_011986_010 Hb_000853_410 Hb_000853_410 Hb_012572_020--Hb_000853_410 Hb_000504_130 Hb_000504_130 Hb_000032_480--Hb_000504_130 Hb_007017_020 Hb_007017_020 Hb_000032_480--Hb_007017_020 Hb_119504_010 Hb_119504_010 Hb_000032_480--Hb_119504_010 Hb_000032_480--Hb_039262_010 Hb_002360_020 Hb_002360_020 Hb_000032_480--Hb_002360_020 Hb_003124_060 Hb_003124_060 Hb_000906_130--Hb_003124_060 Hb_000731_250 Hb_000731_250 Hb_000906_130--Hb_000731_250 Hb_000084_320 Hb_000084_320 Hb_000906_130--Hb_000084_320 Hb_088538_010 Hb_088538_010 Hb_000906_130--Hb_088538_010 Hb_005224_030 Hb_005224_030 Hb_000906_130--Hb_005224_030 Hb_004734_050 Hb_004734_050 Hb_000906_130--Hb_004734_050 Hb_001160_130 Hb_001160_130 Hb_001617_020--Hb_001160_130 Hb_011360_080 Hb_011360_080 Hb_001617_020--Hb_011360_080 Hb_000368_060 Hb_000368_060 Hb_001617_020--Hb_000368_060 Hb_005539_240 Hb_005539_240 Hb_001617_020--Hb_005539_240 Hb_000061_300 Hb_000061_300 Hb_001617_020--Hb_000061_300 Hb_001946_320 Hb_001946_320 Hb_001617_020--Hb_001946_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00561261 0 0 0 0.00909017 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0102882 0.00809654 0.0155594 0.00320617 0.0173618

CAGE analysis