Hb_000504_130

Information

Type -
Description -
Location Contig504: 139540-144493
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35320g
description POPTRDRAFT_1068899; GPI transamidase component family protein
nr
ID XP_002300056.1
description GPI transamidase component family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GI62
description GPI transamidase component family protein OS=Populus trichocarpa GN=POPTR_0001s35320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_130 0.0 - - GPI transamidase component family protein [Populus trichocarpa]
2 Hb_000032_480 0.1951115549 - - hypothetical protein glysoja_043543 [Glycine soja]
3 Hb_067769_010 0.2619747251 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
4 Hb_007017_020 0.3064200498 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
5 Hb_035687_010 0.3242962987 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_119504_010 0.3319149025 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
7 Hb_002360_020 0.344050671 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000205_340 0.3448879618 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
9 Hb_000213_080 0.3487990146 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
10 Hb_012098_190 0.3528396121 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_001987_010 0.3553211286 - - -
12 Hb_003551_030 0.3567729332 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
13 Hb_002571_090 0.359404364 - - -
14 Hb_000296_060 0.3692878309 - - -
15 Hb_001817_030 0.3708411178 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
16 Hb_069251_010 0.3759540952 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_012424_010 0.3760619099 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_001780_120 0.3769327355 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
19 Hb_001693_040 0.3808430243 - - -
20 Hb_010080_080 0.3816769318 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000504_130 Hb_000504_130 Hb_000032_480 Hb_000032_480 Hb_000504_130--Hb_000032_480 Hb_067769_010 Hb_067769_010 Hb_000504_130--Hb_067769_010 Hb_007017_020 Hb_007017_020 Hb_000504_130--Hb_007017_020 Hb_035687_010 Hb_035687_010 Hb_000504_130--Hb_035687_010 Hb_119504_010 Hb_119504_010 Hb_000504_130--Hb_119504_010 Hb_002360_020 Hb_002360_020 Hb_000504_130--Hb_002360_020 Hb_016482_010 Hb_016482_010 Hb_000032_480--Hb_016482_010 Hb_000032_480--Hb_007017_020 Hb_000032_480--Hb_119504_010 Hb_039262_010 Hb_039262_010 Hb_000032_480--Hb_039262_010 Hb_000032_480--Hb_002360_020 Hb_002571_090 Hb_002571_090 Hb_067769_010--Hb_002571_090 Hb_000065_050 Hb_000065_050 Hb_067769_010--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_067769_010--Hb_000574_550 Hb_000205_340 Hb_000205_340 Hb_067769_010--Hb_000205_340 Hb_000296_060 Hb_000296_060 Hb_067769_010--Hb_000296_060 Hb_000731_250 Hb_000731_250 Hb_007017_020--Hb_000731_250 Hb_000316_020 Hb_000316_020 Hb_007017_020--Hb_000316_020 Hb_001780_140 Hb_001780_140 Hb_007017_020--Hb_001780_140 Hb_002522_020 Hb_002522_020 Hb_007017_020--Hb_002522_020 Hb_001842_130 Hb_001842_130 Hb_007017_020--Hb_001842_130 Hb_001221_370 Hb_001221_370 Hb_035687_010--Hb_001221_370 Hb_004212_040 Hb_004212_040 Hb_035687_010--Hb_004212_040 Hb_035687_010--Hb_000205_340 Hb_035687_010--Hb_002571_090 Hb_003206_080 Hb_003206_080 Hb_035687_010--Hb_003206_080 Hb_143874_010 Hb_143874_010 Hb_035687_010--Hb_143874_010 Hb_001780_120 Hb_001780_120 Hb_119504_010--Hb_001780_120 Hb_007181_020 Hb_007181_020 Hb_119504_010--Hb_007181_020 Hb_094900_010 Hb_094900_010 Hb_119504_010--Hb_094900_010 Hb_009005_050 Hb_009005_050 Hb_119504_010--Hb_009005_050 Hb_000915_030 Hb_000915_030 Hb_119504_010--Hb_000915_030 Hb_000679_220 Hb_000679_220 Hb_119504_010--Hb_000679_220 Hb_012098_190 Hb_012098_190 Hb_002360_020--Hb_012098_190 Hb_050334_010 Hb_050334_010 Hb_002360_020--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002360_020--Hb_001519_210 Hb_000307_230 Hb_000307_230 Hb_002360_020--Hb_000307_230 Hb_032531_010 Hb_032531_010 Hb_002360_020--Hb_032531_010 Hb_054467_010 Hb_054467_010 Hb_002360_020--Hb_054467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0252558 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0286962 0 0.127597 0.0180062 0.0473718

CAGE analysis